Mesh threading #2263
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| name: "CI (RHEL clone: gcc, oneAPI)" | |
| on: | |
| push: | |
| branches: | |
| - release | |
| pull_request: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| merge_group: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| env: | |
| GITHUB_USER: ${{ github.actor }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| PRTE_MCA_rmaps_default_mapping_policy: :oversubscribe | |
| PYTEST_ADDOPTS: "-W error" | |
| jobs: | |
| ci-spack-build: | |
| name: AlmaLinux build and test | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/almalinux/almalinux:10 | |
| strategy: | |
| matrix: | |
| compiler: ["gcc", "oneapi"] | |
| steps: | |
| - name: Install Spack requirements | |
| run: | | |
| dnf -y install file bzip2 ca-certificates git gzip patch python3 tar \ | |
| unzip xz zstd gcc gcc-c++ gcc-gfortran | |
| - name: Get Spack | |
| uses: actions/checkout@v6 | |
| with: | |
| repository: spack/spack | |
| ref: develop | |
| path: spack-src | |
| - name: Get upstream Spack packages | |
| uses: actions/checkout@v6 | |
| with: | |
| repository: spack/spack-packages | |
| ref: develop | |
| path: spack-packages | |
| - name: Get FEniCS Spack packages | |
| uses: actions/checkout@v6 | |
| with: | |
| repository: fenics/spack-fenics | |
| ref: main | |
| path: spack-fenics | |
| - name: Add Spack packages repo | |
| run: | | |
| . $GITHUB_WORKSPACE/spack-src/share/spack/setup-env.sh | |
| spack repo add --name builtin $GITHUB_WORKSPACE/spack-packages/repos/spack_repo/builtin | |
| spack repo add --name fenics $GITHUB_WORKSPACE/spack-fenics/spack_repo/fenics | |
| spack config get repos | |
| spack repo list | |
| - name: Checkout DOLFINx | |
| uses: actions/checkout@v6 | |
| with: | |
| path: dolfinx-src | |
| - name: Create Spack environment | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack env create py dolfinx-src/.github/workflows/spack-config/gh-actions-rh.yml | |
| - name: Add dependencies to environment | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack -e py add mpi petsc+mpi+shared+mumps+superlu-dist slepc parmetis pkgconfig python hdf5+mpi boost pugixml spdlog | |
| spack -e py add python py-nanobind py-numpy py-mpi4py py-petsc4py py-slepc4py py-scikit-build-core+pyproject py-setuptools py-cffi | |
| spack -e py add py-pip cmake catch2 py-pytest py-pytest-xdist ninja | |
| - if: matrix.compiler == 'oneapi' | |
| name: Add oneAPI compilers to environment | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack -e py add intel-oneapi-compilers | |
| - name: Install Spack packages | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack -e py install -j4 -p2 --use-buildcache auto | |
| - name: Push packages to Spack cache and update index | |
| env: | |
| GITHUB_USER: ${{ github.actor }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack -e py buildcache push --base-image ghcr.io/almalinux/almalinux:10 --update-index local-buildcache | |
| if: ${{ !cancelled() }} | |
| - name: Load FEniCS testing environment variables | |
| run: cat dolfinx-src/.github/workflows/fenicsx-refs.env >> $GITHUB_ENV | |
| - name: Install FEniCS Python components | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack env activate py | |
| pip install git+https://github.com/${{ env.ufl_repository }}.git@${{ env.ufl_ref }} | |
| pip install -Ccmake.build-type="Developer" git+https://github.com/${{ env.basix_repository }}.git@${{ env.basix_ref }} | |
| pip install git+https://github.com/${{ env.ffcx_repository }}.git@${{ env.ffcx_ref }} | |
| - name: Configure and build C++ | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack env activate py | |
| cmake -Werror=dev --warn-uninitialized -G Ninja -DBUILD_TESTING=true -DCMAKE_BUILD_TYPE=Developer \ | |
| -DDOLFINX_ENABLE_PETSC=on -DDOLFINX_ENABLE_SLEPC=true \ | |
| -DDOLFINX_ENABLE_PARMETIS=true -DDOLFINX_ENABLE_SUPERLU_DIST=true -B build -S dolfinx-src/cpp/ | |
| cmake --build build | |
| - name: Run tests without install (C++, serial and MPI np=2) | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack env activate py | |
| cd build | |
| ctest -V --output-on-failure -R unittests_np_1 | |
| ctest -V --output-on-failure -R unittests_np_2 | |
| - name: Install C++ | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack env activate py | |
| cmake --build build --target install | |
| - name: Build and run C++ regression tests (serial and MPI (np=2)) | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack env activate py | |
| cmake -Werror=dev --warn-uninitialized -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build/demo/ -S dolfinx-src/cpp/demo/ | |
| cmake --build build/demo | |
| cd build/demo | |
| ctest -V -R demo -R serial | |
| ctest -V -R demo -R mpi_2 | |
| - name: Install gmsh and pyvista (and via package manager install dependencies) | |
| run: | | |
| dnf install -y mesa-libGLU libX11 libXrender mesa-libEGL libglvnd-glx libXcursor libXft libXinerama | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack env activate py | |
| pip install gmsh pyvista | |
| - name: Build Python interface (editable install) | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack env activate py | |
| pip install --check-build-dependencies --no-build-isolation --config-settings=cmake.build-type=Developer --config-settings=build-dir="build" -e 'dolfinx-src/python/[test]' | |
| - name: Set default DOLFINx JIT options | |
| run: | | |
| mkdir -p ~/.config/dolfinx | |
| echo '{ "cffi_extra_compile_args": ["-g0", "-O0" ] }' > ~/.config/dolfinx/dolfinx_jit_options.json | |
| - name: Run demos (Python, serial and MPI) | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack env activate py | |
| python -m pytest -n auto -m serial --durations=10 dolfinx-src/python/demo/test.py | |
| python -m pytest -m mpi --num-proc=2 dolfinx-src/python/demo/test.py | |
| - name: Run Python unit tests (serial and MPI) | |
| run: | | |
| . ./spack-src/share/spack/setup-env.sh | |
| spack env activate py | |
| python -m pytest -n auto -m "not adios2" --durations=50 dolfinx-src/python/test/unit/ | |
| mpirun -np 2 python -m pytest -m "not adios2" dolfinx-src/python/test/unit/ |