Merge pull request #19 from Harrison-Li/Nov-16

update

Author: Harrison-Li

…mic simulation of materials/Lecture 8.md …cs/Atomic simulation of materials/DFT.mddocs/Atomic simulation of materials/Lecture 8.md renamed to docs/Atomic simulation of materials/DFT.md docs/Atomic simulation of materials/Lecture 8.md renamed to docs/Atomic simulation of materials/DFT.md

@@ -1,4 +1,4 @@
-# Lecture 8
+# DFT
 
 **Electron density $\mathbf{\rho(r)}$**
 

…mic simulation of materials/Lecture 9.md …s/Atomic simulation of materials/DFT2.mddocs/Atomic simulation of materials/Lecture 9.md renamed to docs/Atomic simulation of materials/DFT2.md docs/Atomic simulation of materials/Lecture 9.md renamed to docs/Atomic simulation of materials/DFT2.md

@@ -1,4 +1,4 @@
-# Lecture 9
+# DFT2
 
 ### Quick recap of DFT
 

…mic simulation of materials/Lecture 2.md … simulation of materials/Force field1.mddocs/Atomic simulation of materials/Lecture 2.md renamed to docs/Atomic simulation of materials/Force field1.md docs/Atomic simulation of materials/Lecture 2.md renamed to docs/Atomic simulation of materials/Force field1.md

@@ -51,13 +51,15 @@ ML/Transfer learning.md
 ```{toctree}
 :hidden:
 :caption: ML for Materials
-ML For Materials/Deep tensor neural network (DTNN).md
-ML For Materials/GemNet Universal Directional Graph Neural Networks for Molecules.md
 ML For Materials/JT-VAE_handwritten_derivation_view.md
 ML For Materials/Junction Tree VAE.md
 ML For Materials/Material informatics.md
 ML For Materials/MolGAN An implicit generative model for small molecular graphs.md
 ML For Materials/MolGPT.md
+ML For Materials/SchNet.md
+ML For Materials/Deep tensor neural network (DTNN).md
+ML For Materials/GemNet Universal Directional Graph Neural Networks for Molecules.md
+ML For Materials/MACE.md
 ```
 
 ```{toctree}
@@ -71,13 +73,14 @@ Quantum Mechanics/Handwritten_version.pdf
 ```{toctree}
 :hidden:
 :caption: Atomic simulation
-Atomic simulation of materials
+Atomic simulation of materials/Force field1.md
+Atomic simulation of materials/Force field2.md
+Atomic simulation of materials/Introduction to quantum mechanics.md
+Atomic simulation of materials/Muti-electron system.md
 Atomic simulation of materials/Hartree-Fock.md
-Atomic simulation of materials/Lecture 2.md
-Atomic simulation of materials/Lecture 3.md
-Atomic simulation of materials/Lecture 4.md
-Atomic simulation of materials/Lecture 8.md
-Atomic simulation of materials/Untitled.md
+Atomic simulation of materials/DFT.md
+Atomic simulation of materials/DFT2.md
+Atomic simulation of materials/DFT in solids.md
 ```
 
 ```{toctree}
@@ -91,6 +94,15 @@ Python/Pandas.md
 Python/Python Tutorial.md
 ```
 
+```{toctree}
+:hidden:
+:caption: Agent
+Agent/Agent architectures.md
+Agent/Langgraph.md
+Agent/Langgraph.md
+```
+
+
 [commonmark]: https://commonmark.org/
 [github-ci]: https://github.com/Harrison-Li/Computational-materials-notes/workflows/continuous-integration/badge.svg?branch=main
 [github-link]: https://github.com/Harrison-Li/Computational-materials-notes