From d3e09ca609c2d1f350e729c51f9b08dd7c1f6e34 Mon Sep 17 00:00:00 2001 From: PaulJonasJost Date: Thu, 11 Sep 2025 15:28:33 +0200 Subject: [PATCH 1/2] added link to amici notebook --- doc/example/petab_import.ipynb | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/doc/example/petab_import.ipynb b/doc/example/petab_import.ipynb index 5bb6a88d0..2f9e61b8c 100644 --- a/doc/example/petab_import.ipynb +++ b/doc/example/petab_import.ipynb @@ -128,6 +128,11 @@ "print(\"Model states: \", list(model.getStateIds()), \"\\n\")" ] }, + { + "metadata": {}, + "cell_type": "markdown", + "source": "The AMICI model can be used to directly simulate the model and customize outputs such as states, sensitivities, and observables. For more details, see the [amici notebook](./amici). We want to integrate this simulation model into an objective function we can repeatedly call during optimization." + }, { "cell_type": "markdown", "metadata": {}, From a14e22470c38d53a8d7a5b84e8da45c31a5c5386 Mon Sep 17 00:00:00 2001 From: PaulJonasJost Date: Wed, 24 Sep 2025 10:31:18 +0200 Subject: [PATCH 2/2] No actual link anymore. --- doc/example/petab_import.ipynb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/doc/example/petab_import.ipynb b/doc/example/petab_import.ipynb index 2f9e61b8c..42386856c 100644 --- a/doc/example/petab_import.ipynb +++ b/doc/example/petab_import.ipynb @@ -131,7 +131,7 @@ { "metadata": {}, "cell_type": "markdown", - "source": "The AMICI model can be used to directly simulate the model and customize outputs such as states, sensitivities, and observables. For more details, see the [amici notebook](./amici). We want to integrate this simulation model into an objective function we can repeatedly call during optimization." + "source": "The AMICI model can be used to directly simulate the model and customize outputs such as states, sensitivities, and observables. For more details, see the `amici notebook`. We want to integrate this simulation model into an objective function we can repeatedly call during optimization." }, { "cell_type": "markdown",