BAM header only has a subset of the reference chromosomes -- please make sure they match!

[pingxinxing]

22 10:55:53.983] [idxdepth] [92186] [info] BAM: FB1.rmdup.bam
�[00m�[1m[2024-06-22 10:55:53.983] [idxdepth] [92186] [info] Reference: /home/Dongxianggui/11.PXX/01.NCBI/GCF_009806435.1_UM_NZW_1.0_genomic.fna
�[00m�[1m[2024-06-22 10:55:54.010] [idxdepth] [92186] [info] Output path: FB1.depth.json
�[00m�[33m�[1m[2024-06-22 10:55:57.265] [idxdepth] [92186] [warning] BAM header only has a subset of the reference chromosomes -- please make sure they match!
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067375.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067376.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067377.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067378.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067379.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067380.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067381.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067382.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067383.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067384.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067385.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067386.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067387.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067388.1
�[00m�[1m[2024-06-22 10:56:00.166] [idxdepth] [92192] [info] Thread 140014104876800 skipping NC_067389.1

Hello, author, I'm sure there are all chromosomes in my bam file, but why is there such an error message? It skipped all my chromosomes.