Check subprocess exit and tidy command line generation #15
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| name: Build and Test | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| jobs: | |
| test: | |
| name: Test on ${{ matrix.os }} / Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13","3.14"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install build pytest | |
| - name: Build and install package | |
| run: | | |
| pip install . | |
| - name: Verify binaries are bundled | |
| run: | | |
| python -c "from smudgeplot.cli import get_binary_path; print(get_binary_path('hetmers'))" | |
| python -c "from smudgeplot.cli import get_binary_path; print(get_binary_path('extract_kmer_pairs'))" | |
| - name: Test CLI | |
| run: | | |
| smudgeplot --version | |
| smudgeplot -h | |
| smudgeplot hetmers --help | |
| smudgeplot extract --help | |
| build-wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-15-intel, macos-14] # macos-15-intel=x86, macos-14=arm64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build wheels | |
| uses: pypa/cibuildwheel@v2.21.3 | |
| # Config is read from pyproject.toml [tool.cibuildwheel] | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-${{ matrix.os }} | |
| path: ./wheelhouse/*.whl | |
| build-sdist: | |
| name: Build source distribution | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build sdist | |
| run: | | |
| pip install build | |
| python -m build --sdist | |
| - name: Verify sdist doesn't contain binaries | |
| run: | | |
| tar -tzf dist/*.tar.gz | grep -E 'bin/(hetmers|extract_kmer_pairs)$' && exit 1 || echo "Good: no binaries in sdist" | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: sdist | |
| path: dist/*.tar.gz | |
| test-sdist: | |
| name: Test sdist on ${{ matrix.os }} | |
| needs: build-sdist | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: sdist | |
| path: dist | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install from sdist | |
| run: | | |
| pip install dist/*.tar.gz | |
| - name: Verify binaries are compiled | |
| run: | | |
| python -c "from smudgeplot.cli import get_binary_path; print(get_binary_path('hetmers'))" | |
| python -c "from smudgeplot.cli import get_binary_path; print(get_binary_path('extract_kmer_pairs'))" | |
| - name: Test compiled binaries execute | |
| run: | | |
| smudgeplot hetmers --help | |
| smudgeplot extract --help |