.

Author: HernandoMV

lecilab_behavior_analysis/plot_testing.ipynb

@@ -89,41 +89,6 @@
     "fig = subject_progress_figure(df, perf_window=100, summary_matrix_plot=False)"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "import lecilab_behavior_analysis.df_transforms as dft\n",
-    "import lecilab_behavior_analysis.plots as plots\n",
-    "df_ch = dft.get_center_hold_df(dft.analyze_df(df))\n",
-    "plots.plot_mean_and_cis_by_date(df_ch, item_to_show=\"number_of_pokes\", group_trials_by=\"year_month_day\", color='tab:green')\n",
-    "plots.plot_mean_and_cis_by_date(df_ch, item_to_show=\"hold_time\", group_trials_by=\"year_month_day\", color='tab:red')"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "from lecilab_behavior_analysis.df_transforms import add_trial_of_day_column_to_df, add_day_column_to_df\n",
-    "import matplotlib.pyplot as plt\n",
-    "\n",
-    "df = add_day_column_to_df(df)\n",
-    "df = add_trial_of_day_column_to_df(df)\n",
-    "\n",
-    "tdf = df[df[\"year_month_day\"] == \"2025-06-21\"]\n",
-    "\n",
-    "tdf[\"port2_holds\"] = tdf.apply(lambda row: utils.get_trial_port_hold(row, 2), axis=1)\n",
-    "fig, axs = plt.subplots(2, 1, figsize=(10, 5))\n",
-    "ax1 = plots.plot_number_of_pokes_histogram(tdf, port_number=2, ax=axs[0])\n",
-    "ax2 = plots.plot_port_holding_time_histogram(tdf, port_number=2, ax=axs[1])\n",
-    "\n",
-    "plt.show()"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -144,7 +109,7 @@
     "from lecilab_behavior_analysis.figure_maker import session_summary_figure\n",
     "from lecilab_behavior_analysis.df_transforms import add_trial_of_day_column_to_df, add_day_column_to_df\n",
     "# select the session you want to plot\n",
-    "date = \"2025-06-26\"\n",
+    "date = \"2025-06-30\"\n",
     "df = add_day_column_to_df(df)\n",
     "df = add_trial_of_day_column_to_df(df)\n",
     "sdf = df[df[\"year_month_day\"] == date]\n",
@@ -215,7 +180,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "dev",
    "language": "python",
    "name": "python3"
   },