docs: update repository URLs

Author: Hem-W

README.md

@@ -1,16 +1,16 @@
 <p align="center">
-  <a href="https://hem-w.github.io/dominosee-dev/">
+  <a href="https://github.com/PREP-NexT/DOMINO-SEE">
     <img src="https://raw.githubusercontent.com/Hem-W/dominosee-dev/refs/heads/main/docs/source/_static/DOMINO-SEE%20Horizontal.svg" width="550" alt="DOMINO-SEE logo">
   </a>
 </p>
 
 <p align="center">
   <a href="https://www.python.org/"><img alt="Build" src="https://img.shields.io/badge/Made%20with-Python-1f425f.svg?color=purple"></a>
-  <a href="https://github.com/Hem-W/dominosee-dev"><img src="https://img.shields.io/github/contributors/Hem-W/dominosee-dev.svg" alt="GitHub contributors"></a>
-  <a href="https://github.com/Hem-W/dominosee-dev"><img src="https://img.shields.io/github/issues/Hem-W/dominosee-dev.svg" alt="GitHub issues"></a>
+  <a href="https://github.com/PREP-NexT/DOMINO-SEE"><img src="https://img.shields.io/github/contributors/PREP-NexT/DOMINO-SEE.svg" alt="GitHub contributors"></a>
+  <a href="https://github.com/PREP-NexT/DOMINO-SEE"><img src="https://img.shields.io/github/issues/PREP-NexT/DOMINO-SEE.svg" alt="GitHub issues"></a>
   <a href="https://twitter.com/PREPNexT_Lab"><img src="https://img.shields.io/twitter/follow/PREPNexT_Lab.svg?label=Follow&style=social" alt="Twitter Follow"></a>
-  <a href="https://github.com/Hem-W/dominosee-dev"><img src="https://img.shields.io/github/license/Hem-W/dominosee-dev.svg" alt="License"></a>
-  <a href="https://github.com/Hem-W/dominosee-dev"><img src="https://badges.frapsoft.com/os/v1/open-source.svg?v=103" alt="Download"></a>
+  <a href="https://github.com/PREP-NexT/DOMINO-SEE"><img src="https://img.shields.io/github/license/PREP-NexT/DOMINO-SEE.svg" alt="License"></a>
+  <a href="https://github.com/PREP-NexT/DOMINO-SEE"><img src="https://badges.frapsoft.com/os/v1/open-source.svg?v=103" alt="Download"></a>
 </p>
 
 <p align="center">
@@ -55,13 +55,13 @@ This section includes a brief tutorial on running your first DOMINO-SEE model.
 1. Clone the repo
 
     ```bash
-    git clone https://github.com/Hem-W/dominosee-dev.git
+    git clone https://github.com/PREP-NexT/DOMINO-SEE.git
     ```
 
 2. Install the dependencies through conda
 
     ```bash
-    cd dominosee-dev
+    cd DOMINO-SEE
     conda env create -f environment.yml
     conda activate dominosee
     ```