Alpha v0.2.2

• Add filter for chain incongruence #64
• Add filter to identify CNV across chains #69
• Fix potential bug with masked allele llk from np.empty

Alpha v0.2.1

• Add missing sub-module for statistics on integer encoded sequences

Alpha v0.2.0

• Use non-normalized probability encodings for reads #56
• Remove probabilistic encoding sub-module
• Rename allelic and symbolic encoding sub-modules to integer and character
• Add MEC score to VCF output #58
• Rename RC format field to RCOUNT
• Add RCALLS format field to record the number of variant encoding bases among reads
• Add RASSIGN format field to record approximate read assignment to haplotypes based on MEC
• Improve string formatting of floats in VCF output to remove .0 from values without decimals

Alpha v0.1.0

Merge pull request #57 from timothymillar/dev

Release 0.1.0