Record which tables are included in omopcat

[milanmlft]

Definition of Done / Acceptance Criteria

As a user, I want to know which OMOP tables are included in the catalogue so I have an idea of which concepts I can expect to find.

Testing

No response

Documentation

Document the included tables somewhere visible in the app. Maybe in the help page?

Dependencies

No response

Details and Comments

Example case: a researcher is interested in patient ethnicity so tries searching for that in the catalogue, but this won't show up as the person table is not included in the pre-processed data.

The tables currently included are visible in the monthly_counts preprocessing, but we should record them somewhere more accessible.

omopcat/preprocessing/R/monthly_counts.R

Lines 17 to 53 in c05402b

	arg_list <- list(
	list(
	omop_table = cdm[["measurement"]],
	concept_col = "measurement_concept_id",
	date_col = "measurement_date"
	),
	list(
	omop_table = cdm[["observation"]],
	concept_col = "observation_concept_id",
	date_col = "observation_date"
	),
	list(
	omop_table = cdm[["condition_occurrence"]],
	concept_col = "condition_concept_id",
	date_col = "condition_start_date"
	),
	list(
	omop_table = cdm[["drug_exposure"]],
	concept_col = "drug_concept_id",
	date_col = "drug_exposure_start_date"
	),
	list(
	omop_table = cdm[["procedure_occurrence"]],
	concept_col = "procedure_concept_id",
	date_col = "procedure_date"
	),
	list(
	omop_table = cdm[["device_exposure"]],
	concept_col = "device_concept_id",
	date_col = "device_exposure_start_date"
	),
	list(
	omop_table = cdm[["specimen"]],
	concept_col = "specimen_concept_id",
	date_col = "specimen_date"
	)
	)