initial commit #1

	name: Run challenge result

	on:
	push:
	pull_request:

	jobs:
	run-challenge:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.13'

	- name: Run workshop scripts
	continue-on-error: true
	run: \|
	if [ -d workshop_scripts ]; then
	shopt -s nullglob
	files=(workshop_scripts/*)
	if [ ${#files[@]} -eq 0 ]; then
	echo "No files found in workshop_scripts"
	else
	for f in "${files[@]}"; do
	if [ -x "$f" ]; then
	echo "Running executable: $f"
	"$f"
	else
	case "$f" in
	*.py)
	echo "Running python: $f"
	python "$f"
	;;
	*.sh)
	echo "Running bash: $f"
	bash "$f"
	;;
	*)
	echo "Skipping unknown/non-executable file: $f"
	;;
	esac
	fi
	done
	fi
	else
	echo "No workshop_scripts directory present"
	fi
	env:
	CI: true

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	if [ -f requirements.txt ]; then pip install -r requirements.txt; else pip install biopython; fi

	- name: Run workshop test
	run: python workshop_test.py workshop_data/*.txt
	env:
	CI: true

	- name: Upload result.fasta as artifact
	uses: actions/upload-artifact@v4
	with:
	name: result.fasta
	path: result.fasta

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