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Releases: TaufiaHussain/pertpy-perturbation-analysis

v1.0.0 - Initial PertPy perturbation analysis pipeline

08 Feb 20:35
@TaufiaHussain TaufiaHussain
v1.0.0
03d74b6

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PertPy Perturbation Analysis Pipeline — Initial Release

This release provides a reproducible, script-based pipeline for analyzing a CRISPR Perturb-seq dataset using PertPy and Scanpy.

Dataset

Norman & Weissman 2019 Perturb-seq dataset (scPerturb standardized AnnData).

Features

  • Automatic dataset download
  • Metadata inspection
  • Perturbation label preparation
  • Pseudobulk perturbation profiles
  • Control-difference computation
  • PCA/UMAP condition-space visualization
  • Top-gene reports per perturbation

Pipeline scripts

Assets 2
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