output results

[tan5251]

Hi. I campare condition1 to condition2. How to know the differential TAD (strength type) is more strength in condition1 or condition2 ?

[mingbao96]

Hi, Thanks for reaching out your question.

The related method has been published in our newly released article, which you can check out if interested.
We plan to update the codes and add this functionality to our package soon. You are welcome to follow and use it.

Best wishes.

[PinpinSui]

Hello,

Thank you so much for this wonderful tool!
I read the methods and found one paragraph about the strength up or down. How can I use diffDomain to determin up or down?

Thank you,

Pinpin Sui

[liuyc27]

Hi @PinpinSui,

Usage and Example 2 sections on the Wiki have been updated to introduce the methods for distinguishing between strength-change up and strength-change down TADs.For details, please refer to the following links:

• Usage
• Example 2: Testing TADs on all chromosomes

Thank you!