Updating to jetset v1.3 following issues arises

[Kisgithub]

ERROR collecting miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/tests/test_users.py _
ImportError while importing test module '/home/hegro/miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/tests/test_users.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
miniconda3/envs/jetset/lib/python3.10/site-packages/_pytest/python.py:493: in importtestmodule
mod = import_path(
miniconda3/envs/jetset/lib/python3.10/site-packages/_pytest/pathlib.py:582: in import_path
importlib.import_module(module_name)
miniconda3/envs/jetset/lib/python3.10/importlib/init.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
:1050: in _gcd_import
???
:1027: in _find_and_load
???
:1006: in _find_and_load_unlocked
???
:688: in _load_unlocked
???
miniconda3/envs/jetset/lib/python3.10/site-packages/_pytest/assertion/rewrite.py:184: in exec_module
exec(co, module.dict)
miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/tests/test_users.py:6: in
from .test_jet_model import TestJets,hadronic_func
miniconda3/envs/jetset/lib/python3.10/site-packages/_pytest/assertion/rewrite.py:184: in exec_module
exec(co, module.dict)
miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/tests/test_jet_model.py:4: in
from jetset.jet_model import Jet
miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/jet_model.py:17: in
from .jet_spectral_components import JetSpecComponent, SpecCompList
miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/jet_spectral_components.py:19: in
from .jetkernel import jetkernel as BlazarSED
miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/jetkernel/jetkernel.py:10: in
from . import _jetkernel
E ImportError: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by /home/hegro/miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/jetkernel/_jetkernel.cpython-310-x86_64-linux-gnu.so)
=========================== short test summary info ============================
ERROR miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/tests/test_users.py
=============================== 1 error in 0.63s ===============================
ERROR: found no collectors for /home/hegro/miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/tests/test_users.py::TestUs

please help

[andreatramacere]

Hi, to reproduce this error I need yo know exactly the command you used, and how you installed the code. Please, try to install it in a clean environment. Moreover, if you installed from sources, do not run the test within the source code directory.

[Kisgithub]

I just updated the jetset version 1.3 using the following command

1. conda create --name jetset python=3.10 ipython jupyter
2. conda activate jetset
3. conda install -c andreatramacere -c astropy -c conda-forge 'jetset>=1.3'

run the test command
4. pytest --disable-warnings --pyargs -vvv jetset.tests.test_users::TestUser

and found such error.

[andreatramacere]

Looking at the erroe message above, it looks like there is missing library in your system:

E ImportError: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by /home/hegro/miniconda3/envs/jetset/lib/python3.10/site-packages/jetset/jetkernel/_jetkernel.cpython-310-x86_64-linux-gnu.so)

this might be due to your linux distro, which one is it?

You can try one of the following possible solutions, but first uninstall jetset from your conda environmet

A) Installing from source: https://jetset.readthedocs.io/en/1.3.0/install.html#install-the-jetset-from-source
OR
B) install the binaries from pip using conda i.e.: pip install jetset>=1.3

Anyhow, if you provide me full info about your system would be useful to me, there might be something related to the conda build pipeline

Cheers
Andrea

[Kisgithub]

NAME="Ubuntu"
VERSION="20.04.6 LTS (Focal Fossa)"
ID=ubuntu
ID_LIKE=debian
PRETTY_NAME="Ubuntu 20.04.6 LTS"
VERSION_ID="20.04"
HOME_URL="https://www.ubuntu.com/"
SUPPORT_URL="https://help.ubuntu.com/"
BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/"
PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
VERSION_CODENAME=focal
UBUNTU_CODENAME=focal

[andreatramacere]

thanks, I will see if I can reproduce the problem. Please, let me know if one of the solution above work.
Cheers
Andrea

[Kisgithub]

How do I uninstall Jetset from your conda environment?
Is there any specific command or using remove?

[andreatramacere]

How do I uninstall Jetset from your conda environment? Is there any specific command or using remove?

Remove works, if you installed with conda install

[Kisgithub]

Thanks

…

On Sat, Oct 19, 2024, 22:10 andrea tramacere ***@***.***> wrote: How do I uninstall Jetset from your conda environment? Is there any specific command or using remove? Remove works, if you installed with conda install — Reply to this email directly, view it on GitHub <#87 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AQXH22X5HSOUCEG44TSV35DZ4KDONAVCNFSM6AAAAABQHPLSG2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDIMRUGA3DCMZSGU> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[andreatramacere]

Hi, I think this issue could show up again with future versions of binaries built for conda, other possible solution is to update your libc as suggested here: https://stackoverflow.com/a/78711377. For the current version, since it is fixed for you, you have to do nothing.
I will keep this issue open, thanks for reporting.