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Releases: biolink/kgx

1.3.0

21 Jun 15:32

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  • Add streaming option to validation

1.2.0

17 Jun 21:25

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  • Update BMT to 0.7.2
  • Update LinkML to 1.0.0
  • Pin some major release versions in requirements.txt

1.1.0

24 May 22:47

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  • Migrate to LinkML from BiolinkML

1.0.0

16 Mar 17:51

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  • Fix bug with caching records in RdfSource
  • Add shortcuts for arguments in all CLI operations
  • Fix usage in CLI

1.0.0b0

11 Mar 18:56

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1.0.0b0 Pre-release
Pre-release
  • Fixed caching bug in RdfSource
  • Fixed bug when setting 'provided_by' for a source

1.0.0a0

04 Mar 20:54

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1.0.0a0 Pre-release
Pre-release
  • Added Source implementation for reading from various data stores
  • Added Sink implementation for writing to various data stores
  • Added a simplified Transformer that is agnostic
  • Refactor KGX to make use of Sources and Sinks
  • Added ability to stream graphs (Thanks to @gregr for the inspiration)

0.5.0

23 Feb 22:32

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  • This is the final release on the 0.x.x
  • Added ability to assign a default category in SssomTransformer when the incoming category is invalid
  • Added the ability to generate different types of graph summary reports

0.4.0

08 Feb 22:18

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  • Fixed a bug in NtTransformer when parsing malformed triples
  • Added a transformer for parsing SSSOM
  • Added ability to fold predicates to node properties
  • Added ability to unfold node properties to predicates
  • Added ability to remove singleton nodes from a graph
  • Fixed bug in KGX CLI transform operation that prevented stack trace from showing up
  • Unified the way predicates are parsed across different transformers
  • Added ability to annotate edges with OWLStar vocabulary in RdfOwlTransformer

0.3.1

21 Jan 01:08

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  • Fixed a bug that led to import errors
  • Fixed column ordering when exporting CSV/TSV
  • Added ability to generate a TRAPI knowledge map for a graph
  • Fixed bug in ObographJsonTransformer when inferring node category

0.3.0

21 Dec 22:16

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  • Added Graph API to KGX
  • Added compatibility to Biolink Model 1.4.0
  • Added the ability to facet on node and edge properties for graph-summary CLI operation
  • Fixed a bug where source name defined in YAML was not being used for graph name