Main tool: colorid
Code repository: https://github.com/hcdenbakker/colorid
Basic information on how to use this tool:
- executable: colorid
- help: --help
- version: --version
- description: |
Experiments with using BIGSI data structure for metagenomic and QC applications
Full documentation: https://github.com/hcdenbakker/colorid
# create index
colorid build -r ref_file_example.txt -b test -k 31 -s 50000000 -n 4
# search
colorid search -b test.bxi -q SRR4098796_1.fastq.gz -r SRR4098796_2.fastq.gz