Main tool : ngmaster
In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST).
Additional tools:
- any2fasta 0.4.2
- mlst 2.23.0
- python 3.9.0
- biopython 1.80
- perl 5.32.1
- bioperl 1.7.9
# test ngmaster with the test FASTA file included with ngmaster code
$ ngmaster /opt/conda/lib/python3.9/site-packages/ngmaster/test/test.fa
FILE SCHEME NG-MAST/NG-STAR porB_NG-MAST tbpB penA mtrR porB_NG-STAR ponA gyrA parC 23S
/opt/conda/lib/python3.9/site-packages/ngmaster/test/test.fa ngmaSTar 4186/231 2569 241 23 42 100 100 10 2100