3.0.2

pmga v3.0.2

Main tool: pmga

In addition to pmga, this docker image contains the required databases built by pmga-build. The pre-built databases are located in /pmga/blastdbs.

Example commands

# Test H. influenzae genome
docker run --rm -u $(id -u):$(id -g) -v ${PWD}:/data pmga:latest pmga /data/GCF_900478275.fna --blast /pmga/blastdbs

# Force H. influenzae genome (via --species)
docker run --rm -u $(id -u):$(id -g) -v ${PWD}:/data pmga:latest pmga /data/GCF_900478275.fna --blast /pmga/blastdbs --species hinfluenzae

View full pmga help options: docker run --rm -u $(id -u):$(id -g) -v ${PWD}:/data pmga:latest pmga --help