Main tool : Prokka
Additional tools:
- prodigal 2.6.3
- bedtools 2.31.1
- barrnap 0.9
- ncbi-blast+ 2.12.0
- tbl2asn 25.3
- hmmer 3.4
- perl 5.38.2
- bioperl 1.7.8
- aragorn 1.2.41
Full documentation: link to documentation
Automated prokaryotic genome annotation tool
# run prokka on the provided test FASTA file (plasmid sequence)
prokka --cpus 2 --outdir asm --prefix asm test/plasmid.fna