CHANGELOG.md

[1.1.2] - 2017-07-16

• Changed a description line in the getClusterPrivacy() doc to fix installation under some R3.6 versions (issue 32)

[1.1.1] - 2019-07-15

Changed

• Fixed docker build: use of BiocManager, reference to master instead of dev
• Updated src/Makevars to remove the CXX directive, which trips up older versions of R (3.2.x)

[1.1.0] - 2019-07-02

Added

• Support for CCA space

Changed

• buildGraph now use PCA space as the default
• fixed common variance rescaling to use geometric mean of the target

[1.0.3] - 2019-07-02

Added

• Support for Seurat v3 objects

[1.0.2] - 2019-06-26

Added

• Functions to export Conos object to ScanPy

[1.0.1] - 2019-05-1

Fixed

• Default value for cluster.sep.chr in DE functions is changed from '+' to '<!!>', as it shouldn't be normally present in cluster names
• Removed Boost dependency
• Fixed version of Seurat and fpc packages in Docker

[1.0.0] - 2019-04-17

Fixed

• Fixed ggplot2 namespace for function calls in plotClusterStability
• Renamed stable.tree.clusters, get.cluster.graph and scan.k.modularity
• Removed exports of largeVis internals, get.cluster.graph and get_nearest_neighbors
• embedding is stored with samples by rows now (i.e. not transposed anymore)
• Using scale.data instead of data in Seurat if provided

Deprecated

• multitrap.community and multimulti.community functions

[0.1.0] - 2019-04-17

Added

• Pre-release version