conos/NAMESPACE at master · drhodges/conos · GitHub

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# Generated by roxygen2: do not edit by hand

S3method(as.dendrogram,fakeCommunities)
export(Conos)
export(basicSeuratProc)
export(bestClusterThresholds)
export(bestClusterTreeThresholds)
export(conosShinyApp)
export(dendSetColorByMixture)
export(dendSetWidthByBreadth)
export(embeddingPlot)
export(getBetweenCellTypeCorrectedDE)
export(getBetweenCellTypeDE)
export(getCorrectionVector)
export(getGreedyCutGroups)
export(getPerCellTypeDE)
export(getPerCellTypeDECorrected)
export(greedyModularityCut)
export(leiden.community)
export(membership.fakeCommunities)
export(plotClusterBarplots)
export(plotComponentVariance)
export(rleiden.community)
export(saveConosForScanPy)
export(saveDEasCSV)
export(saveDEasJSON)
export(scanKModularity)
export(stableTreeClusters)
exportClasses(Conos)
import(Matrix)
import(dendextend)
import(ggplot2)
import(igraph)
import(methods)
import(shiny)
importFrom(dplyr,"%>%")
importFrom(magrittr,"%$%")
importFrom(magrittr,"%<>%")
importFrom(parallel,mclapply)
importFrom(rlang,"%||%")
importFrom(stats,runif)
useDynLib(conos)