diff --git a/src_python/gsm_generation_scripts/seg2gsm.py b/src_python/gsm_generation_scripts/seg2gsm.py index b775b14c..ecc4f065 100644 --- a/src_python/gsm_generation_scripts/seg2gsm.py +++ b/src_python/gsm_generation_scripts/seg2gsm.py @@ -38,7 +38,7 @@ args = parser.parse_args() -segs = pd.read_csv(args.seg_file, sep='\t') +segs = pd.read_csv(args.seg_file, sep='\t',low_memory=False) # standardize seg column names c = segs.columns segs.rename(columns={c[0]: 'Sample',c[1]:'Chromosome',c[2]:'Start',c[3]:'End',c[-1]:'Segment_Mean'}, inplace=True)