From 62ac681374169cab0f51c1ceb4ac21893b6a698e Mon Sep 17 00:00:00 2001 From: Xuan Zhao Date: Wed, 24 Sep 2025 18:04:39 -0400 Subject: [PATCH] add low_memory=False to avoid DtypeWarning in seg2gsm.py --- src_python/gsm_generation_scripts/seg2gsm.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src_python/gsm_generation_scripts/seg2gsm.py b/src_python/gsm_generation_scripts/seg2gsm.py index b775b14c..ecc4f065 100644 --- a/src_python/gsm_generation_scripts/seg2gsm.py +++ b/src_python/gsm_generation_scripts/seg2gsm.py @@ -38,7 +38,7 @@ args = parser.parse_args() -segs = pd.read_csv(args.seg_file, sep='\t') +segs = pd.read_csv(args.seg_file, sep='\t',low_memory=False) # standardize seg column names c = segs.columns segs.rename(columns={c[0]: 'Sample',c[1]:'Chromosome',c[2]:'Start',c[3]:'End',c[-1]:'Segment_Mean'}, inplace=True)