v5.4.2

• fix(ENGKNOW-2566): gor improve csvcc and gtgen to handle genotypes values outside 0 1 2 3 by @gmagnu in #63

Full Changelog: v5.4.1...v5.4.2

v5.4.1

What's Changed

• feat(ENGKNOW-2566): support for more GT values by @gorfather in #57
• fix(ENGKNOW-2388): Add retry for 429 in gor s 3 driver by @gmagnu in #58
• fix(ENGKNOW-2640): Retry for stale file handle by @gmagnu in #61
• fix(ENGKNOW-2564): Fix dict cache error by @gmagnu in #59
• fix(ENGKNOW-2570): Fix granno and where. by @gmagnu in #60
• fix(ENGKNOW-2641): Make GorSystemExceptions retriable. by @gmagnu in #62

Full Changelog: v5.4.0...v5.4.1

v5.4.0

What's Changed

• fix(ENGKNOW-2059): Fix copy refseq folder issue, plus better logging. by @gmagnu in #50
• fix(ENGKNOW-2382): Fix header for empty NOR results. by @gmagnu in #51
• fix(ENGKNOW-2518): Use long for line counts. by @gmagnu in #53
• fix(ENGKNOW-2490): Fix pgor folder write to s3data by @gmagnu in #52
• fix(ENGKNOW-2387): norif and gorif update meta data if file is not found. by @gmagnu in #54
• fix(ENGKNOW-2515): Write does NOT trigger rerun. by @gmagnu in #55
• fix(ENGKNOW-2545): Fix issues with GZipStream by @gmagnu in #56

Full Changelog: v5.3.0...v5.4.0

v5.3.0

What's Changed

• fix(ENGKNOW-2293) - gor write sometimes does not write even if content is changed by @gmagnu in #43
• fix(ENGKNOW-2330): Better compatibility with S3 campat by @gmagnu in #46
• feat(ENGKNOW-2324): Add new option to the GOR signature function by @gmagnu in #45
• feat(ENGKNOW-2158): Count low memory exceptions by @gmagnu in #47
• feat(ENGKNOW-2158): Keep track of low memory occurrences by @gmagnu in #48
• fix(ENGKNOW-2419): Fix type for dis column. by @gmagnu in #49

Full Changelog: v5.2.2...v5.3.0

v5.2.2

What's Changed

• fix(ENGKNOW-2329): Fix handling og vcfFormatTag on missing values. by @gmagnu in #44

Full Changelog: v5.2.1...v5.2.2

v5.2.1

What's Changed

• fix(ENGKNOW-2294): Fix OCI S3 compat compatibility. by @gmagnu in #42

Full Changelog: v5.2.0...v5.2.1

v5.2.0

What's Changed

• feat(ENGKNOW-2207) add EQUALLEN function by @david-chambliss-gdx in #40
• feat(ENGKNOW-1814): First iteration of versioned link files. by @gmagnu in #39
• feat(ENGKNOW-2160): Fix stackoverflow bug in retry logic. by @gmagnu in #41

New Contributors

• @david-chambliss-gdx made their first contribution in #40

Full Changelog: v5.1.4...v5.2.0

v5.1.4

What's Changed

• fix: Add ability to force S3 path style. by @gmagnu in #34
• fix(ENGKNOW-2055): Shrink S3 readbuffers by @gmagnu in #35
• fix: Update RegressionAnalysis.scala by @gorfather in #36
• fix(ENGKNOW-2081): Fix plink returns empty results. by @gmagnu in #37
• fix(ENGKNOW-2060): Add MetricsMonitor and fix pipe headers. by @gmagnu in #38

New Contributors

• @gorfather made their first contribution in #36

Full Changelog: v5.1.3...v5.1.4

v5.1.3

What's Changed

• fix(ENGKNOW-2005): Rollback library update that break S3 multipart upload. by @gmagnu in #33

Full Changelog: v5.1.2...v5.1.3

v5.1.2

What's Changed

• fix(ENGKNOW-2005): Fix threadlimit exceeded error when seeking in Gor by @gmagnu in #32

Full Changelog: v5.1.1...v5.1.2