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How to locate the genomic positions and gene lists of significant regions in CNV heatmaps? #177

@Allen-ZKW

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@Allen-ZKW

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First, thank you for developing and maintaining such a powerful tool! While using infercnvpy for copy number variation (CNV) analysis, I generated CNV heatmaps (as shown in the example or output). The heatmaps clearly show significant CNVs (amplifications or deletions) in specific chromosomal regions for certain cell clusters.

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However, to further advance my analysis, I would like to be able to determine the precise genomic coordinates of these highlighted CNV regions and compile the list of genes residing within them. Could you kindly advise on the best approach within infercnvpy to achieve this? Obtaining this positional and gene-centric information is crucial for the subsequent functional annotation and biological interpretation of my results.

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