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pod5 container

Main tool: pod5

Code repository: https://github.com/nanoporetech/pod5-file-format

Additional tools:

  • python 3.9.17

Basic information on how to use this tool:

  • executable: pod5
  • help: --help
  • version: --version
  • description: "The pod5 package provides the following tools for inspecting and manipulating POD5 files as well as converting between .pod5 and .fast5 file formats."

Additional information:

Full documentation: https://pod5-file-format.readthedocs.io/en/latest/index.html

Example Usage

# split pod5 files into channel-specific pod5 files for parallelization of dorado basecalling
pod5 view . --include "read_id, channel" --output summary.tsv && \
pod5 subset . --summary summary.tsv --columns channel