pecotmr/DESCRIPTION at main · josphe/pecotmr · GitHub

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Encoding: UTF-8
Type: Package
Package: pecotmr
Version: 0.3.3
Date: 2025-02-20
Title: Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
Description: The majority of the statistical models in pecotmr are based on fine-mapped single effects described in Wang G et al (2020) JRSS-B. It also incorporates wrappers to a series of useful TWAS methods as well as utility functions for QTL and GWAS integration.
URL: https://github.com/StatFunGen/pecotmr
BugReports: https://github.com/StatFunGen/pecotmr/issues
Authors@R: c(person("Gao Wang",role = c("cre","aut"),
                  email = "wang.gaow@columbia.edu"),
                  person("Daniel Nachun", role = "aut",
                  email = "dnachun@stanford.edu"))
License: MIT + file LICENSE
Imports:
    IRanges,
    R6,
    Rcpp,
    S4Vectors,
    bigsnpr,
    bigstatsr,
    coloc,
    data.table,
    doFuture,
    dplyr,
    furrr,
    future,
    magrittr,
    matrixStats,
    purrr,
    readr,
    rlang,
    stringr,
    susieR,
    tibble,
    tidyr,
    vctrs,
    vroom
Suggests:
    GBJ,
    Rfast,
    flashier,
    fsusieR,
    glmnet,
    harmonicmeanp,
    knitr,
    mashr,
    mr.ash.alpha,
    mr.mash.alpha,
    mvsusieR,
    pgenlibr,
    qgg,
    quadprog,
    quantreg,
    qvalue,
    rmarkdown,
    snpStats,
    testthat
LinkingTo:
    Rcpp,
    RcppArmadillo,
    RcppGSL
NeedsCompilation: yes
VignetteBuilder: knitr
RoxygenNote: 7.3.2