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Add --barcode-pos option for manually setting the barcode starting position (starting from 0) in Read 2.
Add --convert-cell-barcode option to make the conversion of cell barcodes to match RNA cell barcodes for 10X data optional, so that other protocols such as CROP-Seq can still keep the original barcodes. Notice that for Hashing or CITE-Seq data, this option is automatically turned on for TotalSeq-B antibodies.