curl not found when running with docker profile with jaffal fusion turn on

[yinshiyi]

Description of the bug

Command executed:

curl
-L https://ndownloader.figshare.com/files/28168755
-o for_jaffal.tar.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_NANOSEQ:NANOSEQ:RNA_FUSIONS_JAFFAL:GET_JAFFAL_REF":
curl: $(curl --version | grep "curl" | sed "s/curl //; s/ .*$//")
END_VERSIONS

Command exit status:
127

Command output:
(empty)

Command error:
.command.sh: line 3: curl: command not found

Command used and terminal output

Relevant files

No response

System information

No response

[yinshiyi]

Additiona issue with minimap2 not found error when running jaffa, I check the docker image, it should be the source of the issue.

docker run -it quay.io/biocontainers/jaffa:2.3--hdfd78af_0 bash
root@50ee3e4159ba:/# minimap2
bash: minimap2: command not found