Does not properly identify seed nodes

[pekarj]

FAVITES Version

1.2.0

Environment

Docker

Configuration File

toy_SAPHIRE.json.zip

Unexpected Behavior

I set up 20000 nodes fro the contact network, 1 seed "P" node, and 19999 susceptible "S" nodes, but FAVITES identified the network as having 20000 seed nodes, rather than 1.

Error message:

Performing transmission simulations...Traceback (most recent call last):
File "/FAVITES/run_favites.py", line 75, in
MF.modules['Driver'].run('/'.join(expanduser(abspath(argv[0])).split('/')[:-1]), ORIG_CONFIG)
File "/FAVITES/modules/Driver_Default.py", line 160, in run
t = MF.modules['TransmissionTimeSample'].sample_time()
File "/FAVITES/modules/TransmissionTimeSample_SAPHIREGEMF.py", line 64, in sample_time
return TransmissionTimeSample_SAAPPHIIREGEMF.sample_time()
File "/FAVITES/modules/TransmissionTimeSample_SAAPPHIIREGEMF.py", line 227, in sample_time
TransmissionTimeSample_SAAPPHIIREGEMF.prep_GEMF()
File "/FAVITES/modules/TransmissionTimeSample_SAAPPHIIREGEMF.py", line 137, in prep_GEMF
assert len(start_states['seed']) == len(GC.seed_nodes), "At time 0, P1+P2+I1+I2+A1+A2 = %d, but there are %d seed nodes. Fix saapphiire_freq_* parameters accordingly" % (len(start_states['seed']),len(GC.seed_nodes))
AssertionError: At time 0, P1+P2+I1+I2+A1+A2 = 20000, but there are 1 seed nodes. Fix saapphiire_freq_* parameters accordingly

[niemasd]

Ah yes, this was a bug I found earlier but haven't fixed yet. It's interpreting "1" as 100% rather than a count. Can you try putting the proportion as a fraction (i.e., 1/20000) for now? I need to fix this

[pekarj]

Ah, okay. That change worked. Thank you!