v25.0.2

This is the API version used in Open Targets 25.06 release.

What's Changed

• 3741 update lit query by @remo87 in #264
• update date filter to enable both ends of the filter by @remo87 in #265
• 3877 protein coding coords by @jdhayhurst in #266
• changed field for resolving study diseases by @jdhayhurst in #267
• add variant annotation field by @remo87 in #268
• 3871 map to struct by @remo87 in #269
• changed json parsing from map to struct for sumstats qc values by @jdhayhurst in #270
• changed Pharmacogenomics.variantAnnotation to an array by @jdhayhurst in #271
• Add resolved ancestors to Disease by @javfg in #272
• Added downloads to metadata endpoint by @jdhayhurst in #273
• add error validation on date filter by @remo87 in #274
• make pathways id optional by @remo87 in #275

Full Changelog: v25.0.1...v25.0.2

v25.0.1

This is a hotfix release to correct a problem with the JVM memory settings not being applied properly.

What's Changed

• configurable jvm memory by @jdhayhurst in #263

Full Changelog: v25.0.0...v25.0.1

v25.0.0

This is the API version used in Open Targets 25.03 release.

What's Changed

• Update to Scala 3 by @remo87 in #249
• add study search index, tidy up elastic index references by @jdhayhurst in #251
• 3641 complexity score by @jdhayhurst in #250
• update l2g model with shap values by @jdhayhurst in #253
• add exact match query, update makefile by @jdhayhurst in #252
• add isTrans QTL flag by @jdhayhurst in #254
• 3776 fix bug for deferred resolver grouping by @jdhayhurst in #255
• 3750 update jsvalue by @remo87 in #256
• 3750 update interactions by @remo87 in #257
• un comment code by @remo87 in #258
• add targetA targetB fields by @remo87 in #259
• renamed variant effect field by @jdhayhurst in #260
• make the niceName optional by @remo87 in #261
• replace field drugResponse by @remo87 in #262

Full Changelog: v24.3.0...v25.0.0

v25.0.0-alpha.13

replace field drugResponse (#262)

v25.0.0-alpha.12

make the niceName optional (#261)

make the nameName optional

v24.3.0-alpha.scala3.5

restore quay tags

v24.3.0-alpha.scala3.4

Full Changelog: v24.3.0-alpha.scala3.3...v24.3.0-alpha.scala3.4

v24.3.0-alpha.scala3.2

What's Changed

• Genetics by @jdhayhurst in #248

Full Changelog: v24.3.0-alpha.scala3.1...24.3.0-alpha.scala3.2

v24.3.0

What's Changed

Genetics merge by @jdhayhurst in #248

• fix coloc otherStudyLocus assignment
• update insilico predictor schema
• add pagination, count and rows to l2GPredictions
• assume colocalisation left study type is always gwas
• colocalisations deferred resolver with counts and rows
• increase page size defaults for resolvers
• refactor elastic retriever to handle multi search and nested responses
• add ResultsHandler
• deferred resolver for credset by variant
• deferred resolver for credible sets by study using multi search api
• genericize the deferred resolver
• study and studies (rows and count) endpoints added
• 3630 Update names to fix json parsing (#243)
• add variant description
• deferred resolver for locus
• wip: nested query for locus resolver
• add nested search for credible sets by variant
• handle null locus
• add credible set(s), singular and plural, and plural locus
• refactor query term validation
• refactor pagination and query terms validation
• make study locus Id mandatory at root api
• validate page args
• add variantId filter arg to locus
• update StudyType enum
• max page size for biosample, increase max size to 10000
• max pagination size by default for study backend
• add variant object to evidence
• remove hgvs from evidence
• read from maps
• udpdate colocalisation schema
• remove strongestLocus2gene
• add l2g features
• size arg to l2g predictions
• add credset count field
• add credset to evidence
• add condition field to study
• add relational fetchers and use max page size for variant resolver
• add l2g predictions
• modify the should terms query
• update xrefs parser
• termsQuery inplace of idQuery for variant and gwas
• fix sumstat qc repr
• update study and cred set models
• add pagination to coloc, filter study types with opensearch
• Don't go to backend if no biosampleId
• add biosample to the gwas api
• add colocalisation data model
• enable querying study by multiple disease terms
• remove funcitonality to query credsets by disease
• enable indirect disease query for gwas study
• add diseaseId arg to gwas study endpoint
• rename variant Id arg
• rename variant id and object
• credibleSetIds renamed to studyLocusIds
• Revert "rename variant entity and id (#208)" (#210)
• rename variant entity and id (#208)
• update cred set schema for disease representation
• adjust loggers, remove commented code
• 3403 variant evidences field (#200)
• add variant id to Pharmacogenomics (#199)
• added offset pagination, studyType enum, resolve credset for study
• add cred sets to disease
• add credset to variant
• add id and study resolver for credsets
• 3379 cred set (#196)
• add new variant fields
• add variant search index
• Update field names
• update Gwas to use JsValue format files Update fetchers Update entities
• resolve entities
• add gwas index entity
• update variant schema update index name format add debug formula
• register variant fetcher move variant field
• Add variant index

Full Changelog: v24.2.1...v24.3.0

v24.3.0-alpha.scala3.3

fix coloc otherStudyLocus assignment