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    115 repositories

    • Rt-without-renewal

      Public
      Julia
      •
      Apache License 2.0
      •8•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • FEED_farmer_disease_management_heterogeneity

      Public
      Julia
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Sep 10, 2023Sep 10, 2023

    • concRt.jl

      Public
      Julia
      •
      MIT License
      •2•0•0•0•Updated Aug 31, 2023Aug 31, 2023

    • NZWastewaterModelling

      Public
      Julia
      •7•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • tutorials_julia

      Public
      This is the official repository for the "doggo dot jl" YouTube channel (fka "julia for talented amateurs").
      HTML
      •
      MIT License
      •65•2•0•0•Updated Jul 17, 2023Jul 17, 2023

    • monkeypox_UK

      Public
      Some code for monkeypox
      Julia
      •
      MIT License
      •2•1•0•0•Updated Feb 25, 2023Feb 25, 2023

    • epi_impacts_NHS_COVID-19_app_first_year

      Public
      Code to support the paper "Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year"
      R
      •1•0•0•0•Updated Feb 22, 2023Feb 22, 2023

    • CoronaNetR

      Public
      R package that offers access to the CoronaNet policy database of government responses to COVID-19.
      R
      •
      Other
      •1•0•0•0•Updated Feb 2, 2023Feb 2, 2023

    • EasyModelAnalysis.jl

      Public
      High level functions for analyzing the output of simulations
      Julia
      •
      MIT License
      •14•0•0•0•Updated Jan 31, 2023Jan 31, 2023

    • COVID-19_Piedmont

      Public
      COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.
      Julia
      •
      MIT License
      •1•0•0•0•Updated Jan 18, 2023Jan 18, 2023

    • estimate-emergence-from-data

      Public
      Code for reproducing the results from the preprint "Estimating the date of emergence of an epidemic outbreak from detection data: Applications to COVID-19".
      R
      •
      MIT License
      •2•0•0•0•Updated Jan 13, 2023Jan 13, 2023

    • COVIDPoliticalEvents.jl

      Public
      Paper replication package.
      Julia
      •
      MIT License
      •1•0•0•0•Updated Dec 31, 2022Dec 31, 2022

    • EpiSimulator

      Public
      EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Dec 23, 2022Dec 23, 2022

    • Flusight-forecast-data

      Public
      R
      •
      Other
      •68•0•0•0•Updated Nov 11, 2022Nov 11, 2022

    • .github

      Public
      Special repository containing the profile directory of JuliaEpi.
      data-sciencestatisticsforecastingepidemiologybayesian-inferenceuncertainty-quantificationinfectious-diseasesnowcastingscenario-analysisinfectious-disease-models
      MIT License
      •0•3•0•0•Updated Nov 8, 2022Nov 8, 2022

    • nowcasting_covid19

      Public
      Bayesian Nowcasting with application to COVID-19 fatalities in Sweden
      R
      •2•0•0•0•Updated Nov 6, 2022Nov 6, 2022

    • EpiSciML-Tutorials

      Public
      Julia for Epidemiology - With a Scientific Machine Learning Perspective.
      Julia
      •4•3•0•0•Updated Oct 29, 2022Oct 29, 2022

    • COVID19_Spatial_Model

      Public
      This repository contains the implementation of the model described in the paper "Predicting the impact of COVID-19 vaccination campaigns - a flexible age-depend…
      Julia
      •
      MIT License
      •2•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • BayesFitR_Halle

      Public
      Teaching material for Halle Summer School 2022: Bayesian inference of infectious disease ODE models in R
      HTML
      •
      MIT License
      •1•2•0•0•Updated Sep 12, 2022Sep 12, 2022

    • covid-19-in-households-public

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •4•0•0•0•Updated Sep 2, 2022Sep 2, 2022

    • linelist

      Public
      R package for handing linelist data
      R
      •
      Other
      •4•0•0•0•Updated Aug 31, 2022Aug 31, 2022

    • MathEpiDeepLearning

      Public
      Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Mo…
      data-sciencemachine-learningstatisticsdeep-learningtime-seriesjuliadata-analysisbayesian-inferencemathematical-biologytime-series-analysis
      JavaScript
      •
      MIT License
      •6•32•0•0•Updated Aug 13, 2022Aug 13, 2022

    • ICD_GEMs.jl

      Public
      ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Cla…
      Julia
      •
      MIT License
      •3•1•0•0•Updated Aug 13, 2022Aug 13, 2022

    • agent-based-epidemic-sim

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •21•0•0•0•Updated Aug 8, 2022Aug 8, 2022

    • ColPrac

      Public
      Contributor's Guide on Collaborative Practices for Community Packages
      17•0•0•0•Updated Aug 5, 2022Aug 5, 2022

    • Discussions

      Public
      Repository hosting organisation-level discussions for JuliaEpi to broadcast news, create conversation in the community, answer questions, and share ideas.
      communityjulia-languageinteroperabilityepidemiologymodellinggithub-discussions
      MIT License
      •0•1•0•0•Updated Aug 4, 2022Aug 4, 2022

    • COVID19-Italy-Integrated-Surveillance-Data

      Public
      COVID-19 integrated surveillance data provided by the Italian Institute of Health and deconvolved via UnrollingAverages.jl.
      Julia
      •
      Other
      •4•1•0•0•Updated Aug 4, 2022Aug 4, 2022

    • CANMOD-2022

      Public
      Materials for 2022 CANMOD Workshop on Compositional Methods for Health Modeling
      HTML
      •
      BSD 2-Clause "Simplified" License
      •5•0•0•0•Updated Aug 3, 2022Aug 3, 2022

    • COVIDScenarioPipeline

      Public
      Public shared code for doing scenario forecasting and creating reports for various governmental entities.
      R
      •
      GNU General Public License v3.0
      •48•0•0•0•Updated Aug 3, 2022Aug 3, 2022

    • EpiNow2

      Public
      Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
      HTML
      •
      Other
      •38•0•0•0•Updated Aug 2, 2022Aug 2, 2022