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@LSSI-ETH Laboratory for Systems and Synthetic Immunology at ETH based in Basel

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    15 repositories

    • Serum_DML_2026

      Public
      Python
      •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

    • RBD_affinity

      Public
      Repo for code used in "High-throughput cell-free profiling of SARS-CoV-2 RBD variants enables rapid and quantitative in vitro affinity landscape mapping reveali…
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

    • plmfit

      Public
      PLMFit platform for TL on PLMs
      aipytorchtransfer-learningplmfine-tuningprotein-engineeringpytorch-lightningdownstream-tasksdeepspeedprotein-language-models
      Python
      •
      MIT License
      •1•20•6•3•Updated Aug 13, 2025Aug 13, 2025

    • synthetic-coevolution

      Public
      Synthetic coevolution reveals adaptive mutational trajectories of neutralizing antibodies and SARS-CoV-2
      Python
      •
      MIT License
      •1•1•0•0•Updated Apr 16, 2025Apr 16, 2025

    • Omicron_DML

      Public
      Code repo associated with the Frei_Gao_2023 manuscript
      Python
      •
      MIT License
      •1•3•1•0•Updated Jan 30, 2025Jan 30, 2025

    • TouCAN

      Public
      PureBasic
      •
      MIT License
      •1•3•2•0•Updated Dec 11, 2024Dec 11, 2024

    • sc_AbSpecificity_pred

      Public
      Repository for ICLR Workshop publication. Code for Antigen specificity predictions of OVA and RBD single cell sequencing datasets.
      Jupyter Notebook
      •1•2•0•0•Updated Aug 28, 2024Aug 28, 2024

    • meta-learning-for-protein-engineering

      Public
      Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023.12.003)
      Python
      •
      MIT License
      •3•21•0•0•Updated Aug 8, 2024Aug 8, 2024

    • Kapetanovic_2024

      Public
      0•0•0•0•Updated Mar 16, 2023Mar 16, 2023

    • SpeedingCARs_2022

      Public
      R
      •2•2•0•0•Updated Sep 27, 2022Sep 27, 2022

    • TIL_scRNA_profiling_lung_cancer_Bieberich

      Public
      Single cell analysis of TILs from lung cancer
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 13, 2022Sep 13, 2022

    • Taft_Weber_2021

      Public
      Python
      •3•4•2•0•Updated Sep 7, 2022Sep 7, 2022

    • Vazquez-Lombardi_2022

      Public
      R
      •1•1•1•0•Updated Aug 18, 2022Aug 18, 2022

    • Ehling_Covid_2021

      Public
      R
      •0•1•0•0•Updated Dec 14, 2021Dec 14, 2021

    • scSeq_convalescentCovid

      Public
      Custom code for data analysis from "A single-cell atlas of lymphocyte adaptive immune repertoires and transcriptomes reveals age-related differences in convales…
      0•1•0•0•Updated Nov 19, 2021Nov 19, 2021