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    37 repositories

    • 3DMetricTools

      Public
      3DMeshMetric is a visualization tool that computes and displays surface-to-surface distance between two triangle meshes using user-specified uniform sampling (b…
      statistics3d-models3d-slicer-extension
      C++
      •
      Apache License 2.0
      •12•7•2•0•Updated Nov 4, 2025Nov 4, 2025

    • ds-analysis

      Public
      Repository containing all notebooks and scripts for Down Syndrome analysis
      Jupyter Notebook
      •2•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • braintypicality-scripts

      Public
      Scripts for processing and running MSMA models on brain data
      Jupyter Notebook
      •2•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • sade

      Public
      Score-based models for anomaly detection, focused on 3D brain MRIs
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Feb 25, 2025Feb 25, 2025

    • SAXIBrainSurfaceQCSlicerExtension

      Public
      Quality Control Model
      Python
      •1•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • categorical-dsm

      Public
      Denoising Score Matching for Categorical Data
      Jupyter Notebook
      •2•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • SlicerSurfaceLearner

      Public
      A Slicer extension to apply convolutional neural network based classifiers on surface meshes (e.g. brain surface)
      Shell
      •5•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • NeosegPipeline

      Public
      This tool allows segmentin brain MRI using a multi-atlas based approach either via joint label fusion (ANTS) or via generating a subject-specific atlas.
      C++
      •
      Apache License 2.0
      •8•6•6•0•Updated Apr 2, 2024Apr 2, 2024

    • BreezeStyleSheets

      Public
      Breeze/BreezeDark-like Qt StyleSheets
      Python
      •
      MIT License
      •133•1•0•0•Updated May 6, 2023May 6, 2023

    • SurfRemesh

      Public
      C++
      •6•0•0•1•Updated Apr 3, 2023Apr 3, 2023

    • DTIAtlasBuilder

      Public
      This tool creates an Atlas image as an average of several DTI images that will be registered
      C++
      •
      Apache License 2.0
      •6•7•2•0•Updated Feb 3, 2023Feb 3, 2023

    • MIDLLatexTemplate

      Public
      Latex template for the MIDL Conference
      TeX
      •104•0•0•0•Updated Jan 10, 2023Jan 10, 2023

    • SLCN_challenge_UNC

      Public
      This repository contains the code used for the Surface Learning For Clinical Neuroscience
      Python
      •1•0•0•0•Updated Aug 31, 2022Aug 31, 2022

    • Local_EACSF

      Public
      C++
      •
      Apache License 2.0
      •3•0•2•0•Updated Apr 15, 2022Apr 15, 2022

    • CurveCompare

      Public
      Compares two fibers file with different metrics: euclidean distance (closest points), tangent metric, curvature metric, overlap, probabilistic overlap
      C++
      •
      Apache License 2.0
      •3•0•0•0•Updated Feb 25, 2022Feb 25, 2022

    • PolyDataCompression

      Public
      Compress VTK or VTP files, allows to select the data type (binary, ASCII or appended), the level of compression (between 0 and 9, the difference however is bare…
      C++
      •
      Apache License 2.0
      •5•0•1•0•Updated Feb 25, 2022Feb 25, 2022

    • CONTINUITY

      Public
      Python
      •3•1•3•0•Updated Feb 20, 2022Feb 20, 2022

    • auto_EACSF

      Public
      A tool for brain extra-axial cerebrospinal fluid extraction from MRI
      C++
      •
      Apache License 2.0
      •5•4•11•0•Updated Dec 15, 2020Dec 15, 2020

    • ExtractLabelSurfaces

      Public
      Tool which extracted label surfaces
      CMake
      •3•0•0•0•Updated Sep 22, 2020Sep 22, 2020

    • AutoTract

      Public
      Automatic Tractography Tool
      deep-learningclassificationdiffusion-mritractography3d-slicer-extension
      CMake
      •
      Apache License 2.0
      •9•2•2•0•Updated Jun 22, 2020Jun 22, 2020

    • AtlasWerks

      Public
      A temporary location to help facilitate cleaning up this code again. AtlasWerks is an open-source (BSD license) software package for medical image atlas generat…
      C++
      •
      Other
      •3•0•0•0•Updated Mar 29, 2019Mar 29, 2019

    • Trafic

      Public
      Diffusion fiber tract classification using deep learning
      deep-learningclassificationdiffusion-mrifiber-tracts
      Python
      •
      Apache License 2.0
      •6•3•0•1•Updated Mar 28, 2019Mar 28, 2019

    • FADTTSter

      Public
      Functional Analysis of Diffusion Tensor Tract Statistics
      statistical-analysisdiffusion-mrifiber-tracts
      C++
      •
      Apache License 2.0
      •4•0•0•0•Updated Mar 28, 2019Mar 28, 2019

    • SlicerCLI

      Public
      Project to build the CLI modules from Slicer statically and independently from Slicer
      CMake
      •2•0•0•1•Updated Mar 7, 2019Mar 7, 2019

    • MeshLib

      Public
      C++
      •20•0•1•0•Updated Aug 23, 2018Aug 23, 2018

    • QTGUI

      Public
      Generalized Parameter Capture for a Qt GUI
      C++
      •3•0•0•0•Updated Aug 6, 2018Aug 6, 2018

    • BRAINSTools

      Public
      A suite of tools for medical image processing focused on brain analysis
      C++
      •
      Apache License 2.0
      •99•0•0•0•Updated Jul 27, 2018Jul 27, 2018

    • ShapeVariationAnalyzer

      Public
      Shape Variation Analyzer allows the classification of 3D models, according to their morphological variation. This tool is based on a deep learning neural networ…
      Python
      •
      Apache License 2.0
      •23•0•0•0•Updated Oct 31, 2017Oct 31, 2017

    • clusterpost

      Public
      Post jobs to a computing grid and store the results in a couch database local or remote
      JavaScript
      •
      Apache License 2.0
      •8•0•0•0•Updated Oct 4, 2017Oct 4, 2017

    • RodentThickness

      Public
      RodentThickness is an automatic cortical thickness measurement tool for rat brains.
      C++
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Sep 22, 2017Sep 22, 2017