Repositories list

• DTIPlayground

  Public
  An integrated framework for DWI Image QC and processing

  Python

  •

  MIT License

  •2•13•8•0•Updated Feb 23, 2026Feb 23, 2026

• SPHARM-PDM

  Public
  Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pat…

  decompositionspherical-harmonics3d-models+ 13d-slicer-extension

  C++

  •

  Apache License 2.0

  •23•54•8•0•Updated Nov 4, 2025Nov 4, 2025

• ShapePopulationViewer

  Public
  ShapePopulationViewer is a software that allows you to dynamically interact with multiple surfaces at the same time

  visualizationpopulation3d-models+ 2color-mapping3d-slicer-extension

  C++

  •

  Apache License 2.0

  •17•2•2•1•Updated Nov 3, 2025Nov 3, 2025

• BrainKeychainAutomation

  Public
  Python

  •

  BSD 2-Clause "Simplified" License

  •1•1•0•0•Updated Apr 21, 2025Apr 21, 2025

• DTIPlaygroundLab

  Public
  DTIPlayground Web UI Project

  Vue

  •2•0•0•0•Updated Apr 4, 2025Apr 4, 2025

• MeshToLabelMap

  Public
  3d-slicer-extension

  C++

  •

  Apache License 2.0

  •7•7•3•0•Updated Jun 14, 2024Jun 14, 2024

• NeuroRuler

  Public
  A program that calculates head circumference from MRI data (.nii, .nii.gz, .nrrd).

  Python

  •

  MIT License

  •4•8•19•0•Updated May 15, 2024May 15, 2024

• MUMMI

  Public
  MUlti-Modality Mri Imputation

  Apache License 2.0

  •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

• DTIProcessToolkit

  Public
  DTIProcess is a DTI processing and analysis toolkit developed in UNC and University of Utah

  estimationdiffusion-mri3d-slicer-extension

  C++

  •

  Apache License 2.0

  •8•7•2•0•Updated Oct 26, 2023Oct 26, 2023

• dcm_to_bids

  Public
  Converts a dicom directory to bids format

  Python

  •

  Apache License 2.0

  •0•0•3•0•Updated Aug 22, 2023Aug 22, 2023

• GROUPS

  Public
  Group wise registration for 3d-models

  registration3d-models3d-slicer-extension

  C++

  •

  Apache License 2.0

  •11•0•4•0•Updated Apr 3, 2023Apr 3, 2023

• RigidAlignment

  Public
  Rigid alignment of landmarks on the unit sphere

  3d-slicer-extension

  C++

  •

  Apache License 2.0

  •5•1•0•0•Updated Apr 3, 2023Apr 3, 2023

• DTIPlaygroundNative

  Public
  DTIPlayground Native

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 30, 2023Jan 30, 2023

• MeshValmet

  Public
  MeshValmet is a tool that measures surface to surface distance between two triangle meshes using user-specified uniform sampling

  C++

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Dec 2, 2022Dec 2, 2022

• DTIPlaygroundTools

  Public
  DTIPlayground required toolset build script

  CMake

  •

  Apache License 2.0

  •1•0•0•0•Updated Aug 11, 2022Aug 11, 2022

• ReadImageHeader

  Public
  Small tool to print (ITK) image header information. It can also be used to convert an image into a different format.

  C++

  •2•0•0•0•Updated Feb 25, 2022Feb 25, 2022

• NormalizeDWIGradientVectors

  Public
  This tool normalizes Diffusion Weighted Images (DWI) gradients.

  C++

  •3•0•0•0•Updated Feb 25, 2022Feb 25, 2022

• ITKTransformTools

  Public
  Tools allowing to perform basic operations on ITK transform files such as printing their content, concatenating them, inverting them, computing the smaller boun…

  transformationsimage-processinginsight-toolkit

  C++

  •

  Apache License 2.0

  •3•0•0•0•Updated Feb 25, 2022Feb 25, 2022

• CombineDWIs

  Public
  Combine Diffusion Weighted Images (NRRD) with potentially different b-values

  C++

  •2•0•0•0•Updated Feb 25, 2022Feb 25, 2022

• niral_utilities

  Public
  NIRAL Utilities are open-source applications developped at UNC-Chapel Hill in the Neuro Image Research and Analysis Lab (NIRAL)

  C++

  •

  Apache License 2.0

  •12•7•3•0•Updated Feb 18, 2022Feb 18, 2022

• CIVILITY

  Public
  Cloud Based Interactive Visualization of Tractography Brain Connectome (CIVILITY) is an interactive visualization tool of brain connectome in the web.

  seedfslbrain-connectivity+ 4tractographyconnectivity-matrixbrain-connectomecivility

  JavaScript

  •

  Apache License 2.0

  •4•8•0•0•Updated Jun 8, 2021Jun 8, 2021

• ImageNoise

  Public
  Computes the Signal to Noise Ratio in MRI

  C++

  •6•1•0•0•Updated May 28, 2021May 28, 2021

• DTIPrep

  Public
  DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation

  quality-controldiffusion-mri3d-slicer-extension

  C++

  •

  Apache License 2.0

  •11•19•19•0•Updated Mar 9, 2021Mar 9, 2021

• DTIFiberTractStatistics

  Public
  This is a software which allows the user to study the behavior of water diffusion (using DTI data) along the length of the white matter fiber-tracts

  C++

  •

  Apache License 2.0

  •7•4•8•0•Updated Jan 6, 2021Jan 6, 2021

• DTI-Reg

  Public
  DTI-Reg is an open-source C++ application that performs pair-wise DTI registration, using scalar FA map to drive the registration

  registrationdiffusion-mri3d-slicer-extension

  CMake

  •

  Apache License 2.0

  •2•2•1•0•Updated Jan 5, 2021Jan 5, 2021

• ABC

  Public
  ABC (Atlas Based Classification) is a comprehensive processing pipeline developed and used at University of North Carolina and University of Utah for brain MRIs

  C++

  •5•2•0•0•Updated Jun 26, 2020Jun 26, 2020

• TextureRLE

  Public
  Run length encoding texture analysis filters and texture features extraction for medical images.

  C++

  •

  Apache License 2.0

  •2•2•0•0•Updated Oct 16, 2019Oct 16, 2019

• ResampleDTIlogEuclidean

  Public
  Software to resample Diffusion Tensor Images (DTI) in the log-euclidean framework.

  euclideanresamplingdiffusion-mri+ 13d-slicer-extension

  TeX

  •

  Apache License 2.0

  •3•1•2•0•Updated May 2, 2019May 2, 2019

• ShapeComplexityIndex

  Public
  C++

  •0•0•0•0•Updated May 1, 2019May 1, 2019

• FiberViewerLight

  Public
  Fiber ViewerLight is an open-source C++ application to analyze fiber bundles

  C++

  •

  Apache License 2.0

  •3•0•1•0•Updated Mar 29, 2019Mar 29, 2019