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    48 repositories

    • epid_households

      Public
      Code for investigating the effect of household sizes on epidemic disease spread. Includes data and analysis of COVID-19 across European countries as example.
      Jupyter Notebook
      •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • priesemann-group.github.io

      Public
      website
      HTML
      •1•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • perspective_heart_and_brain_binder

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Feb 5, 2026Feb 5, 2026

    • telegram_quality_control

      Public
      Preprocessing pipeline and quality control scripts for the TeraGram dataset.
      Jupyter Notebook
      •0•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • perspective_heart_and_brain

      Public
      Data, models, and figures used in the preparation of our perspective article on the non-linear dynamics of heart and brain
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jan 28, 2026Jan 28, 2026

    • neuro_op

      Public
      Neuroscience-inspired opinion modelling, or "Global information organisation emerging from topology-restricted active inference"
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 21, 2025Oct 21, 2025

    • testing-paradox-HIV-STI

      Public
      Testing artefacts in pharmaceutically-controlled multi-pathogen systems: a modelling study
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • icomo

      Public
      Tools for the inference of compartmental models
      Python
      •
      MIT License
      •2•11•0•0•Updated Sep 23, 2025Sep 23, 2025

    • complexdynamics

      Public
      Code for: Societal self-regulation induces complex infection dynamics and chaos
      Jupyter Notebook
      •0•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • optimizing_pandemic_mitigation

      Public
      Code for the "Systematic Optimization of Infectious Disease Mitigation given Seasonality, Vaccination and Variants" paper
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 11, 2025Sep 11, 2025

    • llm_opinion_dynamics

      Public
      Python repository for simulation and Bayesian modeling of opinion dynamics between LLM agents
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Aug 29, 2025Aug 29, 2025

    • mrestimator

      Public
      Toolbox for the Multistep Regression Estimator
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•14•0•0•Updated Jun 26, 2025Jun 26, 2025

    • nninfo

      Public
      A Python Package for the Analysis of Deep Neural Networks using Information Theory
      deep-learninginformation-theorycomplexityrepresentation-learningpartial-information-decomposition
      Python
      •
      Other
      •1•8•0•0•Updated Jun 6, 2025Jun 6, 2025

    • synaptic_power_law_adaptation

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Feb 5, 2025Feb 5, 2025

    • mouse_visual_timescales

      Public
      Signatures of hierarchical temporal processing in the mouse visual system
      Jupyter Notebook
      •3•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • Infomorphic_Networks

      Public
      information-theorypartial-information-decomposition
      Jupyter Notebook
      •2•16•0•0•Updated Dec 5, 2024Dec 5, 2024

    • RESPINOW-Hub

      Public
      R
      •8•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • custom_hopfield_images

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 8, 2024Oct 8, 2024

    • covid19_variants_chile

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 30, 2024May 30, 2024

    • stimulating_modular_cultures

      Public
      Code accompanying our publication "Modular Architecture Facilitates Noise-Driven Control of Synchrony in Neuronal Networks"
      Jupyter Notebook
      •2•2•0•0•Updated Mar 5, 2024Mar 5, 2024

    • prediction_mismatch

      Public
      A model for prediction mismatch responses in cortex
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 12, 2023Nov 12, 2023

    • hdestimator

      Public
      statisticsinformation-theoryscientific
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•7•0•0•Updated Aug 9, 2023Aug 9, 2023

    • covid19_inference

      Public
      Bayesian python toolbox for inference and forecast of the spread of the Coronavirus
      pythoninferencepymc3covid-19bayesian-python-toolbox
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •70•72•7•3•Updated Aug 2, 2023Aug 2, 2023

    • neuromorphic-bistability

      Public
      Repository accompanying Cramer et al., Phys. Rev. Research (2023)
      TeX
      •
      MIT License
      •0•2•0•0•Updated Jul 3, 2023Jul 3, 2023

    • rowland-et-al2023_recurrence

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Jul 3, 2023Jul 3, 2023

    • covid19_inference_forecast

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •53•178•2•0•Updated Jul 3, 2023Jul 3, 2023

    • contact_pattern_outbreak

      Public
      Code accompanying our paper "How contact patterns destabilize and modulate epidemic outbreaks"
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 12, 2023Jun 12, 2023

    • covid-vaccine-dynamics

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Feb 6, 2023Feb 6, 2023

    • covid19_soccer

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jan 31, 2023Jan 31, 2023

    • BayesFlow

      Public
      A library for constructing specialized neural networks for Bayesian parameter inference (invertible networks) and Bayesian model selection (evidential networks)…
      Jupyter Notebook
      •
      MIT License
      •80•0•0•0•Updated Jul 26, 2022Jul 26, 2022