Repositories list

• ProteoBench

  Public
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, ea…

  Jupyter Notebook

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  Apache License 2.0

  •22•50•39•10•Updated Feb 20, 2026Feb 20, 2026

• Results_quant_ion_DIA_Astral

  Public
  Python

  •1•0•0•0•Updated Feb 17, 2026Feb 17, 2026

• Results_quant_ion_DIA_ZenoTOF

  Public
  Apache License 2.0

  •1•0•0•0•Updated Oct 30, 2025Oct 30, 2025

• Results_quant_ion_DIA_diaPASEF

  Public

  Proteobench/Results_quant_ion_DIA_diaPASEF’s past year of commit activity
  Python

  •1•0•0•0•Updated Oct 27, 2025Oct 27, 2025

• Results_quant_ion_DIA_singlecell

  Public
  1•0•0•0•Updated Oct 27, 2025Oct 27, 2025

• Results_quant_ion_DIA_plasma

  Public
  TODO

  1•0•0•0•Updated Oct 20, 2025Oct 20, 2025

• Results_quant_ion_DDA

  Public
  Results_Module2_quant_DDA

  Python

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  Apache License 2.0

  •2•0•0•0•Updated Oct 7, 2025Oct 7, 2025

• Results_quant_ion_DDA_Astral

  Public

  Proteobench/Results_quant_ion_DDA_Astral’s past year of commit activity
  Python

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  Apache License 2.0

  •1•0•0•0•Updated Jul 22, 2025Jul 22, 2025

• Results_quant_ion_DIA_AIF

  Public
  Python

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  Apache License 2.0

  •1•0•0•0•Updated Jul 16, 2025Jul 16, 2025

• Results_denovo_lfq_DDA_HCD

  Public
  1•0•0•0•Updated Jul 1, 2025Jul 1, 2025

• Results_quant_peptidoform_DDA

  Public
  Results_quant_peptidoform_DDA

  Python

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  Apache License 2.0

  •1•0•0•0•Updated Jun 30, 2025Jun 30, 2025

• Results_subcellprofile_DOMLFQ_protein_DIA_EXPL

  Public
  Python

  •1•0•0•0•Updated Mar 5, 2025Mar 5, 2025

• Results_quant_peptidoform_DIA

  Public
  0•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• proteobench.github.io

  Public
  Static website for ProteoBench using Quarto.

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Sep 25, 2023Sep 25, 2023