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    37 repositories

    • NTM-Human

      Public
      Network Transport Model of Tau spread on the human brain connectome
      MATLAB
      •1•0•0•0•Updated Feb 13, 2026Feb 13, 2026

    • Tau_Transport

      Public
      Code and data files required to generate all results for the axonal transport regulation project
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Feb 4, 2026Feb 4, 2026

    • NTM_ru

      Public
      Network Transport Model of Tau spread including cellular release and uptake mechanisms
      MATLAB
      •1•0•0•0•Updated Feb 4, 2026Feb 4, 2026

    • RajLab-Bibliography

      Public
      Bibliography files for RajLab papers
      TeX
      •0•2•0•0•Updated Dec 24, 2025Dec 24, 2025

    • Stage-based-Network-Diffusion

      Public
      Stage-based Network Diffusion (StaND) for Alzheimer's tau progression modeling.
      Python
      •
      Apache License 2.0
      •1•2•0•0•Updated Oct 31, 2025Oct 31, 2025

    • EBM-Nexis

      Public
      Nexis code to be run on EBM time series, including forward/inverse and individual/cohort fitting
      Jupyter Notebook
      •1•0•0•0•Updated Jul 3, 2025Jul 3, 2025

    • SuStaIn

      Public
      SuStaIn event based model, data preprocessing and analysis
      Jupyter Notebook
      •1•0•0•0•Updated Jun 17, 2025Jun 17, 2025

    • CellTypeVulnerability

      Public
      Mouse tauopathy cell-type regional vulnerability project
      MATLAB
      •
      MIT License
      •0•2•0•0•Updated Jan 31, 2025Jan 31, 2025

    • Nexis

      Public
      Code for running the extended Network Diffusion Model (eNDM)
      MATLAB
      •
      MIT License
      •0•2•0•0•Updated Jan 15, 2025Jan 15, 2025

    • Nexis-Human

      Public
      Nexis set up to fit to individual human data (gene or global)
      Jupyter Notebook
      •1•1•0•0•Updated Jan 8, 2025Jan 8, 2025

    • MISS-Pipeline

      Public
      Method for mapping cell types across brain using ISH atlases
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • journalclub

      Public
      Journal Club
      schedulelabjournalsarticles
      GNU General Public License v3.0
      •7•4•0•0•Updated Sep 9, 2024Sep 9, 2024

    • IntDegSeg

      Public
      A repository for the article Integrative, Segregative, and Degenerate Harmonics of the Structural Connectome
      MATLAB
      •
      MIT License
      •0•4•0•0•Updated Jul 29, 2024Jul 29, 2024

    • Joint-structure-function-modeling-in-AD

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 9, 2024Apr 9, 2024

    • SBI-SGM-clean

      Public
      Jupyter Notebook
      •4•0•0•0•Updated Mar 16, 2024Mar 16, 2024

    • NexIS_SBI

      Public
      Code for NexIS:SBI (Eventually to merge into main repo.)
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 15, 2024Mar 15, 2024

    • SC-from-FC

      Public
      MATLAB
      •0•0•0•0•Updated Feb 7, 2024Feb 7, 2024

    • Brainframe

      Public
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Sep 19, 2023Sep 19, 2023

    • CellTypeConnectivity

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Aug 9, 2023Aug 9, 2023

    • cns2023

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 18, 2023Jul 18, 2023

    • SGMforFMRI

      Public
      A repo for the SGM for fMRI project.
      MATLAB
      •0•0•0•0•Updated Jun 9, 2023Jun 9, 2023

    • TauDirectionality

      Public
      Network-based model of tau propagation with directionality in the mouse brain
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Feb 10, 2023Feb 10, 2023

    • tau-PET-prediction

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jan 28, 2023Jan 28, 2023

    • Brainframe_old

      Public
      Matlab functionality for creating 3D human & mouse brain renderings, with many options.
      MATLAB
      •
      MIT License
      •0•2•0•0•Updated Sep 17, 2022Sep 17, 2022

    • cns2022

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 18, 2022Jul 18, 2022

    • cortography

      Public
      Utilities for brain atlas related tasks
      brainatlas
      Jupyter Notebook
      •
      The Unlicense
      •3•2•6•0•Updated Dec 21, 2021Dec 21, 2021

    • spectrome-stability

      Public
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated Nov 10, 2021Nov 10, 2021

    • spectrome-revisited

      Public
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Nov 10, 2021Nov 10, 2021

    • cns2021

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 30, 2021Jun 30, 2021

    • spectrome

      Public
      Spectral graph model base code and examples
      spectrumneuroscienceconnectivitybrainconnectome
      Jupyter Notebook
      •
      MIT License
      •5•7•7•2•Updated May 19, 2021May 19, 2021