Repositories list

• network_management

  Public
  Ansible deploy of opennms and diagram of network

  Jinja

  •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

• pathogen-genomics-march-2024

  Public
  A course on Pathogen Bioinformatics

  HTML

  •

  MIT License

  •525•2•1•0•Updated Mar 22, 2025Mar 22, 2025

• klebsiella_2024

  Public
  SCSS

  •

  MIT License

  •2•0•0•0•Updated Mar 22, 2025Mar 22, 2025

• mpxv-genomics-october2024

  Public
  SCSS

  •

  MIT License

  •2•0•0•0•Updated Nov 1, 2024Nov 1, 2024

• COSMO

  Public
  A tool for detecting operons in microorganisms using RNA-seq data

  tuberculosisoperon

  Python

  •

  GNU General Public License v3.0

  •5•0•4•0•Updated Aug 15, 2023Aug 15, 2023

• pathogen-bioinformatics-june-2023

  Public
  HTML

  •

  MIT License

  •5•1•0•0•Updated Jul 7, 2023Jul 7, 2023

• ilifu-common-infra

  Public
  0•0•0•0•Updated Apr 3, 2023Apr 3, 2023

• ilifu-kubernetes

  Public
  HCL

  •1•0•0•0•Updated Mar 1, 2023Mar 1, 2023

• user_documentation

  Public
  Repository for all user facing documentation for SANBI and SANBI systems.

  5•0•1•0•Updated Aug 1, 2022Aug 1, 2022

• runbeast

  Public
  Wrapper to submit multiple BEAST replicate jobs to the cluster

  Shell

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jul 6, 2022Jul 6, 2022

• sars_cov_2_bioinformatics

  Public
  0•0•0•0•Updated May 26, 2022May 26, 2022

• tools-sanbi-uwc

  Public
  Contains a set of Galaxy Tools mostly written by the SANBI-UWC Team.

  Python

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Feb 1, 2022Feb 1, 2022

• ansible-role-cephfs_client

  Public
  2•0•0•0•Updated Aug 28, 2021Aug 28, 2021

• ansible-role-common

  Public
  An Ansible role to bootstrap machines added to the SANBI network with their base common packages required for further assignment.

  Jinja

  •1•0•0•0•Updated Aug 28, 2021Aug 28, 2021

• NBMethyl

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Jul 28, 2021Jul 28, 2021

• NBSurvival

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jun 28, 2020Jun 28, 2020

• irida_server_ansible

  Public
  Ansible setup for a SANBI server integrated with the cluster and prepared to run Galaxy for IRIDA

  MIT License

  •0•0•0•0•Updated Jun 21, 2020Jun 21, 2020

• ansible-role-cloudns-acme

  Public
  ACME based LetEncrypt support using ClouDNS

  MIT License

  •0•0•0•0•Updated Jun 19, 2020Jun 19, 2020

• singularity-containers

  Public
  A collection of Singularity image definitions for SANBI purposes.

  Shell

  •1•1•0•0•Updated Jun 3, 2020Jun 3, 2020

• ansible-role-gateway

  Public
  A role to confirgure the SSH access machine for SANBI

  Shell

  •1•0•0•0•Updated Apr 6, 2020Apr 6, 2020

• hpc-in-a-day

  Public
  a full day lesson material to teach the basics of using a HPC cluster to novices

  Python

  •

  Other

  •14•0•0•0•Updated Mar 2, 2020Mar 2, 2020

• biocourse_2020_servers

  Public
  HCL

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 2, 2020Mar 2, 2020

• ansible-role-munge

  Public
  Ansible role to install munge

  0•0•0•0•Updated Feb 23, 2020Feb 23, 2020

• galaxy-africa-website

  Public
  The Galaxy Africa Website

  galaxy-projecttuberculosissanbi

  JavaScript

  •4•0•0•0•Updated Jan 8, 2020Jan 8, 2020

• galaxy-africa-2018-website

  Public
  JavaScript

  •0•0•0•0•Updated Jan 8, 2020Jan 8, 2020

• ansible-role-slurm

  Public
  An Ansible role to install Slurm and configure the accounting database at SANBI

  2•0•1•0•Updated Jul 9, 2019Jul 9, 2019

• ansible-play-infrastructure

  Public
  1•0•0•0•Updated Apr 24, 2019Apr 24, 2019

• ansible-role-jenkins

  Public
  Jenkins with NGINX

  1•0•0•0•Updated Apr 11, 2019Apr 11, 2019

• irida

  Public
  Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

  analysisdatastoreirida

  Java

  •

  Apache License 2.0

  •32•0•0•0•Updated Mar 13, 2019Mar 13, 2019

• ansible-role-monitoring

  Public
  1•0•0•0•Updated Nov 28, 2018Nov 28, 2018