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    38 repositories

    • afni

      Public
      Official AFNI source and documentation
      visualizationquality-controlstatisticsmristatistical-inferencefmridwianatomical-mrifmri-data-analysisfmri-analysis
      C
      •
      Other
      •115•183•55•42•Updated Feb 20, 2026Feb 20, 2026

    • docker_v1

      Public
      start of notes for building AFNI docker more directly+simply
      Shell
      •0•1•0•0•Updated Feb 18, 2026Feb 18, 2026

    • apaper_simba

      Public
      Repository for "SIMBA: Scalable Image Modeling using a Bayesian Approach, A Consistent Framework for Including Spatial Dependencies in fMRI Studies"
      Jupyter Notebook
      •1•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • afni_doc

      Public
      Documentation for the AFNI package (mainly RST to build HTML docs)
      Shell
      •2•3•0•1•Updated Jan 23, 2026Jan 23, 2026

    • aproject_rsfmri7T_jsb

      Public
      Processing of 7T resting state FMRI data (single echo, with reverse blip dset)
      Shell
      •0•0•0•0•Updated Jan 15, 2026Jan 15, 2026

    • apaper_DAG2

      Public
      Python
      •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • apmulti_scripts

      Public
      Shell
      •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

    • aproject_anplab_mefmri

      Public
      Scripts for ME-FMRI processing with AFNI.
      Shell
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • afni_edu_scripts

      Public
      scripts used in AFNI class data trees, plus support/initializing scripts
      Shell
      •0•0•0•1•Updated Sep 22, 2025Sep 22, 2025

    • nifti_docs

      Public
      NIFTI documentation
      Python
      •0•0•0•0•Updated Aug 18, 2025Aug 18, 2025

    • aproject_gall_proc

      Public
      Scripts for task FMRI data processing
      Shell
      •0•0•0•0•Updated Jun 2, 2025Jun 2, 2025

    • apaper_gofigure_salmon

      Public
      A set of processing scripts for the publicly available salmon data used in the "Go Figure" draft.
      Shell
      •0•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • apaper_afni_proc

      Public
      Scripts to accompany processing examples in AFNI's afni_proc.py methods description.
      Shell
      •2•3•0•0•Updated Dec 17, 2024Dec 17, 2024

    • apaper_heritability

      Public
      0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • afni_proc_simple_bids_app

      Public
      First draft of making an afni_proc.py BIDS-App with "simple" afni_proc.py processing
      Shell
      •1•1•2•0•Updated Aug 15, 2024Aug 15, 2024

    • qc-demo-repo

      Public
      afni_proc.py quality control (APQC) HTML demo
      JavaScript
      •0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • apaper_apqc_etal

      Public
      These scripts were used to process the dataset used to demo quality control (QC) tools in AFNI (Taylor et al., 2024).
      Shell
      •0•0•0•0•Updated May 17, 2024May 17, 2024

    • apaper_rtms_fmri_stroop

      Public
      Shell
      •0•0•0•0•Updated May 17, 2024May 17, 2024

    • apaper_DAG1

      Public
      0•1•0•0•Updated Jan 10, 2024Jan 10, 2024

    • apaper_highlight_narps

      Public
      Scripts related to the paper
      Shell
      •1•5•0•0•Updated Jul 19, 2023Jul 19, 2023

    • apaper_afniqc_frontiers

      Public
      Scripts accompanying the "Demonstrating Quality Control (QC) Procedures in fMRI" project
      Shell
      •
      BSD 2-Clause "Simplified" License
      •0•4•0•0•Updated Jul 14, 2023Jul 14, 2023

    • test_ricor

      Public
      Shell
      •0•0•0•0•Updated Apr 7, 2023Apr 7, 2023

    • afni_ci_test_data

      Public
      Roff
      •2•1•0•1•Updated Mar 23, 2023Mar 23, 2023

    • apaper_hrf_profiles

      Public
      Scripts accompanying Chen et al. (2022/3) work on modeling, visualizing and understanding FMRI hemodynamic response.
      Shell
      •1•0•0•0•Updated Feb 15, 2023Feb 15, 2023

    • add-afni-tutorials

      Public
      OHBM-2022 Brainhack project idea: Adding to AFNI tutorials
      0•0•0•0•Updated Jun 14, 2022Jun 14, 2022

    • ap_bids_deriv_names

      Public
      OHBM-2022 Brainhack project idea: BIDS derivatives naming for afni_proc.py output
      0•0•0•0•Updated Jun 14, 2022Jun 14, 2022

    • ademo_MACAQUE_DEMO_REST

      Public
      scripts for AFNI's MACAQUE_DEMO_REST
      Shell
      •0•0•0•0•Updated Nov 15, 2021Nov 15, 2021

    • ademo_MACAQUE_DEMO

      Public
      scripts and text files used in creating+distributing AFNI's MACAQUE_DEMO
      Shell
      •0•0•0•0•Updated Nov 15, 2021Nov 15, 2021

    • fitlins

      Public
      Fit Linear Models to BIDS Datasets
      Python
      •
      Apache License 2.0
      •34•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • afnistats

      Public
      A place to iterate on an attempt at packaging afni's R code
      R
      •0•1•0•0•Updated Jun 12, 2020Jun 12, 2020