Repositories list

• Understanding_tradeoffs_publication

  Public

  ncsu-landscape-dynamics/Understanding_tradeoffs_publication’s past year of commit activity
  This is the repository for code used in the publication of the same name.

  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Feb 19, 2026Feb 19, 2026

• rpops

  Public
  PoPS (Pest or Pathogen Spread) R Package

  simulationpathogenmodeling+ 5pestinsectpestspopspathogen-spread

  C++

  •

  GNU General Public License v3.0

  •5•12•11•1•Updated Feb 17, 2026Feb 17, 2026

• r.pops.spread

  Public
  r.pops.spread - PoPS model implemented as a GRASS tool

  simulationhacktoberfestpest+ 7plant-diseasespreadgrass-gispopsgrass-interfacegrass-modulegrass-addon

  C++

  •

  GNU General Public License v2.0

  •0•5•0•2•Updated Feb 9, 2026Feb 9, 2026

• pops-core

  Public
  PoPS Core: C++ library for the Pest or Pathogen Spread Model

  simulationpathogenmodel+ 8epidemiologyhacktoberfestpestspreadpestspopspops-library+ 1

  C++

  •

  GNU General Public License v2.0

  •2•7•17•4•Updated Feb 9, 2026Feb 9, 2026

• Publication--Using_fine-resolution_satellite_imagery_machine_learning_data

  Public
  This is the repository for the field locations and severity values of the late blight study at the Mountain Research Station in 2022 and 2023.

  0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

• popsborder

  Public
  PoPS Border: Simulation of contaminated consignments and their inspections

  simulationopen-scienceborder+ 4hacktoberfestpestinspectionspathways-simulation

  Python

  •

  GNU General Public License v2.0

  •4•3•33•4•Updated Dec 19, 2025Dec 19, 2025

• GIATAR-dataset

  Public

  ncsu-landscape-dynamics/GIATAR-dataset’s past year of commit activity
  Global Invasive and Alien Traits and Records Dataset

  Python

  •

  GNU General Public License v3.0

  •1•5•4•0•Updated Oct 27, 2025Oct 27, 2025

• HPC_conda_PoPS

  Public
  This repo provides YAML for conda to run PoPS along with sample batch script and some explanation

  Shell

  •

  MIT License

  •0•2•0•0•Updated Oct 22, 2025Oct 22, 2025

• pops.sdm

  Public
  R

  •1•0•0•0•Updated Apr 24, 2025Apr 24, 2025

• gsv_host_detector

  Public

  ncsu-landscape-dynamics/gsv_host_detector’s past year of commit activity
  Jupyter Notebook

  •0•2•0•0•Updated Apr 23, 2025Apr 23, 2025

• futures-model-intro-notebook

  Public
  Introduction to FUTURES urban model in GRASS GIS using Jupyter Notebook in Binder

  Jupyter Notebook

  •3•5•5•0•Updated Mar 25, 2025Mar 25, 2025

• pops-intro-grass-notebook

  Public
  Introductory notebook for Pest or Pathogen Spread Simulation in GRASS GIS

  bindernotebookjupyter-notebook+ 3grasspopssudden-oak-death

  Jupyter Notebook

  •0•0•1•1•Updated Mar 14, 2025Mar 14, 2025

• late_blight_model_comparison

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• pops_cbs

  Public
  R

  •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• PoPS-Forecasting-Platform

  Public
  Django backend and API powering popsmodel.org

  hacktoberfest

  HTML

  •

  GNU General Public License v3.0

  •0•4•25•7•Updated Sep 20, 2024Sep 20, 2024

• strain-classifier

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 17, 2024May 17, 2024

• r.pops.potential

  Public
  Computing infestation potential

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 28, 2023Mar 28, 2023

• spongy_moth

  Public
  Case study for spongy moth (Lymantria dispar) formally known as gypsy moth

  R

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Mar 20, 2023Mar 20, 2023

• GRASS_FUTURES

  Public
  Urban growth model designed to capture the spatial structure of future development

  simulationurbanizationgrass-gis+ 1grass-gis-addons

  C

  •

  GNU General Public License v2.0

  •12•31•2•2•Updated Mar 8, 2023Mar 8, 2023

• PoPS-Global

  Public
  A hierarchical model for global plant insect and pathogen spread via human movement

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•5•5•0•Updated Feb 22, 2023Feb 22, 2023

• pandemic_dashboard

  Public
  Repo for Pandemic dashboard development

  CSS

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  GNU General Public License v3.0

  •0•1•1•19•Updated Jan 6, 2023Jan 6, 2023

• host_map

  Public
  R

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  GNU General Public License v3.0

  •1•1•0•0•Updated Dec 15, 2022Dec 15, 2022

• LAMP_assay_automation

  Public
  Automate processing of images from LAMP sensors

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •2•2•0•0•Updated Dec 15, 2022Dec 15, 2022

• pops-process-network

  Public
  Preprocessing script to get inputs for PoPS network model

  Python

  •

  GNU General Public License v3.0

  •1•0•2•1•Updated Nov 8, 2022Nov 8, 2022

• Manuscript--Understanding-the-genotypic-and-phenotypic-structure-of-Phytophthora-nicotianae-outbreak

  Public
  This repo contains code for processing weather data for the manuscript.

  GNU General Public License v2.0

  •0•0•0•0•Updated Nov 3, 2022Nov 3, 2022

• pops_model_api

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•2•0•Updated Oct 5, 2022Oct 5, 2022

• pynodelauncher

  Public
  Launch pleasantly parallel tasks on multiple nodes

  Python

  •

  GNU General Public License v3.0

  •3•2•0•5•Updated Apr 6, 2022Apr 6, 2022

• GEE_Daymet_temp_and_RH_via_Python

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 28, 2022Mar 28, 2022

• pandemic_hpc

  Public
  structure and scripts to run the Pandemic model on HPC

  Python

  •1•0•0•0•Updated Mar 12, 2022Mar 12, 2022

• git.treeofheaven

  Public
  Repository for code used to create Tree of Heaven host maps

  R

  •1•0•0•0•Updated Feb 1, 2022Feb 1, 2022