SBML Team

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39 repositories

libsbml
Public
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers langua…
api library systems-biology libsbml sbml
C++
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Other
•31•54•50•1•Updated Feb 13, 2026Feb 13, 2026
vue3-sbml-validator
Public
vue3 component that validates SBML files
Vue
•
BSD 2-Clause "Simplified" License
•0•0•0•0•Updated Feb 12, 2026Feb 12, 2026
sbmlteam.github.io
Public
The source code and issue tracker for the SBML.org website.
simulation xml systems-biology standards simulation-modeling sbml simulation-model
HTML
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GNU Lesser General Public License v2.1
•5•11•19•0•Updated Feb 12, 2026Feb 12, 2026
sbml-specifications
Public
The specification documents for SBML.
TeX
•2•6•31•3•Updated Feb 3, 2026Feb 3, 2026
jsbml
Public
JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Mar…
java api library parser-library modeling systems-biology sbml
Java
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GNU Lesser General Public License v2.1
•27•40•33•13•Updated Jan 23, 2026Jan 23, 2026
python-libsbml
Public
Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
python package python3 libsbml sbml
Python
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Other
•7•23•9•0•Updated Jan 9, 2026Jan 9, 2026
sbml-test-suite
Public
The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a softwar…
testing simulation systems-biology test-automation ode stochastic testing-tools sbml testing-framework sbml-models
JavaScript
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Other
•13•26•9•1•Updated Dec 3, 2025Dec 3, 2025
.github
Public
Special repository to allow general README, as well as link to COMBINE funding.
MIT License
•0•0•0•0•Updated Oct 27, 2025Oct 27, 2025
libCombine
Public
a C++ library for working with the COMBINE Archive format
C++
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BSD 2-Clause "Simplified" License
•7•8•11•1•Updated Oct 18, 2025Oct 18, 2025
moccasin
Public
MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
python matlab conversion systems-biology ode differential-equations ode-model sbml
Python
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Other
•2•12•25•1•Updated Aug 21, 2024Aug 21, 2024
deviser
Public
Design Explorer and Viewer for Iterative SBML Enhancement of Representations
python automation code-generator xml systems-biology code-generation libsbml sbml
C++
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GNU Lesser General Public License v2.1
•5•6•32•2•Updated Apr 22, 2024Apr 22, 2024
libSBML-dependencies
Public
Set of dependencies for compiling libSBML
automation visual-studio cmake libsbml batch-files sbml cmake-script
C
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Other
•1•3•0•0•Updated Oct 23, 2023Oct 23, 2023
QtDeviser
Public
DEVISER Edit, an UI for defining DEVISER input files
qt xml code-generation libsbml sbml sbml-l3
NSIS
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GNU Lesser General Public License v2.1
•0•3•0•0•Updated Oct 7, 2023Oct 7, 2023
SBMLToolbox
Public
An open-source toolbox for working with SBML in MATLAB
simulation matlab systems-biology sbml
MATLAB
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Other
•1•2•0•0•Updated Feb 6, 2023Feb 6, 2023
specifications-bib
Public
TeX
•1•0•0•0•Updated Aug 15, 2022Aug 15, 2022
specifications-tex
Public
PostScript
•0•0•0•0•Updated Apr 27, 2022Apr 27, 2022
liblx
Public
The XML parser portion of LibSBML as a separate library.
C++
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Other
•2•0•5•2•Updated Oct 7, 2021Oct 7, 2021
sbml-spatial-models
Public
Repository of models to test exchange of sbml-spatial models.
sbml
MIT License
•2•5•0•1•Updated Sep 17, 2021Sep 17, 2021
SBMLreporter
Public
SBMLreporter provides a way to read the contents of XML-based SBML files. This is helpful and important for, e.g., error detection, proofreading and model commu…
sbml
Java
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GNU Lesser General Public License v2.1
•1•4•5•0•Updated Aug 17, 2021Aug 17, 2021
sbml-level-3-paper-overleaf
Public
Copy of Overleaf project for the SBML Level 3 paper submitted to MSB
sbml
TeX
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Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Jun 25, 2020Jun 25, 2020
logos-and-promos
Public
SBML logo artwork and their terms of use
sbml
PostScript
•0•1•0•0•Updated May 6, 2020May 6, 2020
sbml-level-3-paper
Public
Overall repository for the SBML Level 3 paper submitted to MSB
sbml
TeX
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Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Apr 27, 2020Apr 27, 2020
sbml-level-3-paper-response-letter
Public
Response to reviewers for SBML Level 3 paper submitted to MSB
sbml
TeX
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Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Apr 27, 2020Apr 27, 2020
sbml-level-3-paper-diff
Public
Setup for running latexdiff on the SBML Level 3 paper
sbml
Makefile
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GNU Lesser General Public License v2.1
•0•0•0•0•Updated Apr 27, 2020Apr 27, 2020
libsbml-build-scripts
Public
Scripts and utilities used to build and deploy a libSBML release
sbml
Makefile
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GNU Lesser General Public License v2.1
•0•1•0•0•Updated Mar 13, 2020Mar 13, 2020
cdroms-2003
Public
Archive of CD-ROMS we produced in 2003
HTML
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GNU Lesser General Public License v2.1
•0•0•0•0•Updated Mar 11, 2020Mar 11, 2020
template
Public template
Template repository for software projects by the SBML Team
template-project
Shell
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GNU Lesser General Public License v2.1
•0•1•0•0•Updated Mar 11, 2020Mar 11, 2020
jib-paper-2019
Public
Paper published in the Journal of Integrative Bioinformatics in 2019
TeX
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Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Mar 10, 2020Mar 10, 2020
mathml-tests
Public
Tests for infix-to-mathML and mathML-to-infix for both libsbml and jsbml.
sbml
C++
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Other
•0•2•0•0•Updated Feb 27, 2020Feb 27, 2020
labels-try-2
Public
0•0•0•0•Updated Feb 26, 2020Feb 26, 2020