Repositories list

• flocking-by-stopping

  Public
  Codes for the paper "Flocking by stopping -- a novel mechanism of consensus in collective movement"

  Python

  •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

• Emergent-speed-synchrony-facilitates-heterospecific-schooling

  Public
  This repository contains code for emperical analysis and model simulations for mixed species schooling data for Rosy barbs and Tiger barbs.

  0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

• power-law-ecology

  Public
  This repo contains the R codes to generate the plots in the article named - 'Importance of power-law distributions in ecology'

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

• Bhat_Guttal_2023_finite_evolution

  Public
  Scripts and data accompanying Bhat and Guttal 2023, "Eco-evolutionary dynamics for finite populations from first principles and noise-induced reversal of select…

  Jupyter Notebook

  •1•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• data-driven-mesoscale-sde

  Public
  Code for the paper: Data-driven discovery of stochastic dynamical equations of collective motion. Nabeel, A., Jadhav, V., Raj, M. D., Sire, C., Theraulaz, G., E…

  stochastic-differential-equationsvicsek-modelmesoscale+ 2collective-behaviourself-propelled-particles

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Feb 3, 2025Feb 3, 2025

• collective-responses-of-flocking-sheep-to-herding-dog

  Public
  This repository contains codes for data and agent-based model analysed in the article "Collective responses of flocking sheep (Ovis aries) to a herding dog (bor…

  collective-behaviourherdingescape-behaviour+ 1agent-based-herding-model

  MATLAB

  •

  GNU General Public License v3.0

  •2•4•0•0•Updated Feb 3, 2025Feb 3, 2025

• PyDaddy

  Public
  Python package to discover stochastic differential equations from time series data

  pythontime-seriessde+ 2stochastic-differential-equationstime-series-analysis

  Python

  •

  GNU General Public License v3.0

  •12•99•1•0•Updated Jan 12, 2025Jan 12, 2025

• trait-variation

  Public
  Python

  •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• positive-feedback-cluster-dynamics

  Public
  Some C code to supplement the patchy-ecosterics repository

  Python

  •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

• schooling_fish

  Public
  This repository contains codes and data used in the research article "Noise-Induced Schooling of Fish" (https://doi.org/10.1038/s41567-020-0787-y). Currently to…

  MATLAB

  •

  GNU General Public License v3.0

  •0•11•0•0•Updated Oct 16, 2024Oct 16, 2024

• patchy-ecosterics

  Public
  Investigating cluster dynamics in models of patchy ecosystems

  cellular-automatapercolation-theoryphase-transitions+ 2critical-thresholdscluster-dynamics

  Python

  •2•2•0•0•Updated Jun 14, 2024Jun 14, 2024

• Cluster-Size-PLD

  Public
  Producing Cluster Size PLD in R

  R

  •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

• Asynchronous-model-apuroopa

  Public
  MATLAB

  •1•0•0•0•Updated Aug 14, 2023Aug 14, 2023

• MOTHe-GUI

  Public
  Python

  •

  MIT License

  •4•3•1•0•Updated Jun 26, 2023Jun 26, 2023

• lekking-collective-beh

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Feb 20, 2023Feb 20, 2023

• Lekking-Perspective

  Public
  Lek as collective behaviour - code and data for male and female activity heatmap

  R

  •1•0•0•0•Updated Dec 3, 2022Dec 3, 2022

• cohesion-in-collective-motion

  Public
  MATLAB

  •

  MIT License

  •1•2•0•0•Updated Oct 7, 2022Oct 7, 2022

• mothe

  Public
  An end to end pipeline to track multiple objects against a heterogeneous background with just 5 lines of code

  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 13, 2022Sep 13, 2022

• alt-stable-states-neindia

  Public
  Codes for the paper: Sarania, Guttal, Tamma, 2022, The absence of alternative stable states in vegetation cover of northeastern India, Royal Society Open Scienc…

  2•0•0•0•Updated Apr 26, 2022Apr 26, 2022

• shreesh-tracking-project

  Public
  All the code and files used for Shreesh's fish tracking project

  Python

  •0•0•0•0•Updated Apr 22, 2022Apr 22, 2022

• PercolationModels

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Nov 15, 2021Nov 15, 2021

• blackbuck_herd_escape_dynamics

  Public
  0•0•0•0•Updated Oct 11, 2021Oct 11, 2021

• coarse-graining

  Public
  The codes in this repository coarse-grain the spatial data and calculate the general EWS

  C++

  •2•0•0•0•Updated Oct 4, 2021Oct 4, 2021

• MergeSplit

  Public
  C++

  •

  MIT License

  •1•0•0•0•Updated Sep 29, 2021Sep 29, 2021

• PowerLawCriticalityPaper

  Public
  Codes and data files for the paper "Clustering and correlations: Inferring resilience from spatial patterns in ecosystems"

  R

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Sep 23, 2021Sep 23, 2021

• seir-covid-india

  Public
  R ShinyApp for Age Structured SEIR model for Covid-19

  R

  •

  MIT License

  •0•1•0•0•Updated Sep 23, 2021Sep 23, 2021

• Characterizing_noise

  Public
  MATLAB

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 23, 2021Sep 23, 2021

• Hemigrammus-Data-Correction

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 21, 2021Sep 21, 2021

• cluster-dynamics

  Public
  cluster dynamics in some interacting particle systems

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •3•0•0•0•Updated Jul 25, 2021Jul 25, 2021

• demographic-noise

  Public
  script related to the publication: Majumder, S., Das, A., Kushal, A., Sankaran, S., & Guttal, V. (2021). Finite-size effects, demographic noise, and ecosystem d…

  C++

  •0•0•0•0•Updated Jul 15, 2021Jul 15, 2021