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Formatting fix
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hAMRonization/AmrFinderPlusIO.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -121,7 +121,7 @@ def parse(self, handle):
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field_map = self.prot_field_map
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elif method.endswith('N'):
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field_map = self.nuc_field_map
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elif method in ['COMPLETE','HMM']:
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elif method in ['COMPLETE', 'HMM']:
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field_map = self.prot_field_map if have_prot else self.nuc_field_map
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else:
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warnings.warn(f"Assuming unknown method {method} implies a protein detection"

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