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1 parent 020edf6 commit d77f67dCopy full SHA for d77f67d
src/test/java/htsjdk/beta/codecs/reads/cram/HtsCRAMCodec31Test.java
@@ -70,7 +70,9 @@ public void testRoundTripCRAM31() throws IOException {
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new ReadsDecoderOptions().setCRAMDecoderOptions(
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new CRAMDecoderOptions().setReferencePath(referencePath));
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final ReadsEncoderOptions readsEncoderOptions =
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- new ReadsEncoderOptions().setCRAMEncoderOptions(new CRAMEncoderOptions().setReferencePath(referencePath));
+ new ReadsEncoderOptions()
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+ .setPreSorted(true)
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+ .setCRAMEncoderOptions(new CRAMEncoderOptions().setReferencePath(referencePath));
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try (final CRAMDecoder cramDecoder = (CRAMDecoder)
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HtsDefaultRegistry.getReadsResolver().getReadsDecoder(sourceCRAMPath, readsDecoderOptions);
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