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Force germline on low DOC #234

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Force germline on low DOC#234
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A-alignmentArea: Related to alignmentsC-enhancementCategory: New feature or requestM-possible-scoring-changeMisc: Something that can affect the scoringM-unrefined-ideaThings that are up in the air on the need of being implemented, as well as the exact implementation.
@douweschulte

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@douweschulte
douweschulte
opened on Jul 3, 2023

Allow the user to specify that on low DOC positions the germline should be taken instead of the consensus sequence. This could also be a more gray definition where the germline has a specific weight attached to it and a sufficiently high scoring option still has preference, but that is left for implementation time.

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    A-alignmentArea: Related to alignmentsC-enhancementCategory: New feature or requestM-possible-scoring-changeMisc: Something that can affect the scoringM-unrefined-ideaThings that are up in the air on the need of being implemented, as well as the exact implementation.

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