DESCRIPTION

Package: HoMiStats
Type: Package
Title: Stats for host-microbiome dual transcriptomics
Version: 0.99.0
Authors@R: person("John", "Sterrett", 
                email = "sterrettjd@protonmail.com", 
                role = c("aut", "cre"),
                comment = c(ORCID = "0000-0002-0931-7181"))
Description: Statistical tooling for host-microbiome dual transcriptomics.
    HoMiStats contains tools for metatranscriptome differential expression and
    for creating co-occurrence networks between host and microbial transcripts.
    Additionally, there are tools for transforming data and 
    performing targeted (knowledge-guided) analyses to look for 
    biologically-plausible associations in gene expression between 
    hosts and microbes.
Imports: gamlss, gamlss.dist, broom, broom.mixed, ggplot2, tidyverse, lme4, ZIBR, dplyr, lmerTest, Matrix, parallel, foreach, doParallel, doSNOW, plyr, Rfast, AnnotationDbi, org.Hs.eg.db, DESeq2, stats, utils, stringr
License: MIT + file LICENSE
Encoding: UTF-8
Suggests: 
    knitr,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://github.com/sterrettJD/HoMiStats
BugReports: https://github.com/sterrettJD/HoMiStats/issues
biocViews: GeneExpression, Regression, DifferentialExpression, Transcriptomics, Metagenomics, Microbiome, KEGG
RoxygenNote: 7.3.2