README.md

bwa container

Main tool:

• https://bio-bwa.sourceforge.net/
• GitHub

Example Usage

bwa mem ref.fa reads.fq > aln.sam

bwa aln ref.fa reads.fq > reads.sai; bwa samse ref.fa reads.sai reads.fq > aln-se.sam

Better documentation can be found at https://bio-bwa.sourceforge.net/bwa.shtml