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README.md

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ClustalO container

Main tool:

Clustal Omega is used for creating multiple sequence alignments (MSA). It can handle a number of input combinations, including un-aligned unput sequence files, reference alignments, and hidden markov models. See the full description here: http://www.clustal.org/omega/README.

Example Usage

clustalo --in seqs -o output

clustalo --in seqs --profile1 reference-alignment -o output