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myloasm container

Main tool: myloasm

Code repository: https://github.com/bluenote-1577/myloasm

Additional tools:

  • none

Basic information on how to use this tool:

  • executable: myloasm
  • help: -h, --help
  • version: -V, --version
  • description: Myloasm is a de novo metagenome assembler for long-read sequencing data

Additional information:

Full documentation: https://myloasm-docs.github.io/

Example Usage

# Nanopore R10.4 (sup/hac basecalling)
myloasm reads1.fq reads2.fq reads3.fq -o output_directory -t 50

# PacBio HiFi
myloasm reads1.fq reads2.fq reads3.fq -o output_directory -t 50 --hifi