Main tool : Prokka
Additional tools:
- prodigal 2.6.3
- bedtools 2.29.0
- barrnap 0.9
- ncbi-blast+ 2.9.0
- tbl2asn 25.8
- hmmer 3.1b2 (February 2015)
- perl 5.26.1
- bioperl 1.7.2
Full documentation: link to documentation
Automated prokaryotic genome annotation tool
# run prokka on the provided test FASTA file (plasmid sequence)
prokka --cpus 2 --outdir asm --prefix asm test/plasmid.fna